Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA76_RS06985 Genome accession   NZ_CP094823
Coordinates   1401497..1403887 (+) Length   796 a.a.
NCBI ID   WP_262651711.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1396497..1408887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA76_RS06965 (MUA76_06955) sal(A) 1396804..1398429 (+) 1626 WP_262651709.1 ABC-F type ribosomal protection protein Sal(A) -
  MUA76_RS06970 (MUA76_06960) - 1398489..1399637 (+) 1149 WP_262651710.1 cysteine desulfurase family protein -
  MUA76_RS06975 (MUA76_06965) mnmA 1399630..1400739 (+) 1110 WP_049318720.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA76_RS06980 (MUA76_06970) - 1400826..1401494 (+) 669 WP_049318721.1 tetratricopeptide repeat protein -
  MUA76_RS06985 (MUA76_06975) recD2 1401497..1403887 (+) 2391 WP_262651711.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA76_RS06990 (MUA76_06980) alaS 1404136..1406766 (+) 2631 WP_262651713.1 alanine--tRNA ligase -
  MUA76_RS06995 (MUA76_06985) - 1406834..1407103 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  MUA76_RS07000 (MUA76_06990) ruvX 1407096..1407524 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  MUA76_RS07005 (MUA76_06995) - 1407544..1407849 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90373.59 Da        Isoelectric Point: 4.5764

>NTDB_id=673412 MUA76_RS06985 WP_262651711.1 1401497..1403887(+) (recD2) [Mammaliicoccus sciuri strain IVB6217]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVTKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKLHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=673412 MUA76_RS06985 WP_262651711.1 1401497..1403887(+) (recD2) [Mammaliicoccus sciuri strain IVB6217]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTGACAAACCATCCGAAATACGGCAAGCAACTACAAGCTGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTAATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGATAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTCAATAAGCAGAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGCATTATG
ATTAAACTTAATGAACTTGGTTTCGGACCGAAACTCGCGATGGCAATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCGCCATATCGTTTAGTGATGGATATTAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCTGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATTTTGGTTAACGGGGCGTATGAATTGTTAAATCATAATCAACCTGAAGTTGTAACTAA
AGATCAAATAAATGGTGTCATTATCGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTATATTATTCAGAAGCAAAAAGTGTGCAAATCATTCATAGGCTTTATCAACATCAAGATGAGCTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACATATCGGACAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCTATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCGTGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTAAGTTTGAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTGTTA
GCAGCACCGACTGGACGTGCAGCAAAGCGTTTAAGTGAATCAACTGGACTAGAAGCGATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTACCAATTTTTAAGAGCAGTACCTGATTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTAGGTCCGGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTCATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCAATTAATG
AAAAACTTCACGATCGCTCATTTATTCCGTGTAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTTCAAGGTGCT
GTTAACAAAGGATATAATATGCAAGATATTCAAGTGCTCGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGCGATATTGAATATCGAGAAA
ATGATAAAGTACTACAACTTATTAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTATAC
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTTATTGTGGATTATGAAGGGAATGACATTACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCACTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.689

100

0.501