Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA96_RS06450 Genome accession   NZ_CP094822
Coordinates   1288199..1290589 (+) Length   796 a.a.
NCBI ID   WP_262643259.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283199..1295589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA96_RS06430 (MUA96_06430) sal(A) 1283506..1285131 (+) 1626 WP_262643251.1 ABC-F type ribosomal protection protein Sal(A) -
  MUA96_RS06435 (MUA96_06435) - 1285191..1286339 (+) 1149 WP_262643253.1 cysteine desulfurase family protein -
  MUA96_RS06440 (MUA96_06440) mnmA 1286332..1287441 (+) 1110 WP_262643255.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA96_RS06445 (MUA96_06445) - 1287528..1288196 (+) 669 WP_262643257.1 tetratricopeptide repeat protein -
  MUA96_RS06450 (MUA96_06450) recD2 1288199..1290589 (+) 2391 WP_262643259.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA96_RS06455 (MUA96_06455) alaS 1290839..1293469 (+) 2631 WP_262643260.1 alanine--tRNA ligase -
  MUA96_RS06460 (MUA96_06460) - 1293537..1293806 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  MUA96_RS06465 (MUA96_06465) ruvX 1293799..1294227 (+) 429 WP_262643262.1 Holliday junction resolvase RuvX -
  MUA96_RS06470 (MUA96_06470) - 1294247..1294552 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90335.50 Da        Isoelectric Point: 4.5973

>NTDB_id=673380 MUA96_RS06450 WP_262643259.1 1288199..1290589(+) (recD2) [Mammaliicoccus sciuri strain IVB6223]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEEALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKDETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYVLDQQSLQNG
HTFLPVDILINGAYELLNHNQPEVVTKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVESDTESETESVQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=673380 MUA96_RS06450 WP_262643259.1 1288199..1290589(+) (recD2) [Mammaliicoccus sciuri strain IVB6223]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTTAAAGGTAAAGTGACAAACCATCCGAAATATGGTAAACAACTACAAGCTGAA
ACATTTGAAAAAGAATTACCACAAACTAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGCGAAGAAGCACTTCAGAAAATTATAGATGACCCCGATGTCCTTAAAG
AAATACCTAAACTCAATAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGCATTATG
ATTAAACTTAACGAACTTGGGTTCGGACCGAAACTAGCGATGGCAATTTATCAATTTTATAAAGATGAAACACTTAATAT
TATTAAACAATCTCCTTATCGTTTAGTGATGGATATTAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCAGAACAAG
TAGGCATTTCAAAAGATCATCATGACCGACTTGTAGCGGGTGTCAGTTACGTTCTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGATTAATGGGGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTTACTAA
AGATCAGATTAATGGTGTCATTATCGAAATGAGTGAAGAAAATAAACTTATTATTGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACATATCGGTCAAATTGAAGATATGAATGATGTCTCTTATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCTATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACCGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTGAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTGTTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACTGGACTAGAAGCGATGACAATTCATAGATTAATTGG
ATGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCTGTCCCTGATTATGCGCAAATCATATTTGTGGGTGATGAAGAT
CAATTACCATCAGTTGGACCAGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTCATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGACTTGGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCAACAGTCGTAGAAAAGGTTGTACAAGGTGCG
GTAAATAAAGGGTATAATATGCAAGATATTCAAGTGCTAGCTCCAATATATCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGCGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGCCCTGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCTGAAGAAAATGCACTCGGTAAAGATGTTGTCATTGTTGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAACAGTCACTTGTCGTC
TGTGGTGAAGAGCAAGCCTTTAACCAAGGTATCCAAACACTAGGTCATGAGAGAATGACCTCGTTTGATACGAAATTAAA
AATGTACTTCGATACTGATGTTGAATCTGATACTGAGTCTGAAACTGAATCTGTTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATTGATCCGATGATTAATATGAATGATAAATCTCCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.689

100

0.501