Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG987_RS13720 Genome accession   NZ_CP109296
Coordinates   3034401..3036134 (+) Length   577 a.a.
NCBI ID   WP_406338322.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029401..3041134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG987_RS13690 (OG987_13710) - 3030778..3030975 (-) 198 WP_313937171.1 hypothetical protein -
  OG987_RS13710 (OG987_13730) - 3032352..3032657 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OG987_RS13715 (OG987_13735) - 3032718..3034163 (+) 1446 WP_330480469.1 FGGY family carbohydrate kinase -
  OG987_RS13720 (OG987_13740) rcrP 3034401..3036134 (+) 1734 WP_406338322.1 ABC transporter ATP-binding protein Regulator
  OG987_RS13725 (OG987_13745) rcrQ 3036134..3038059 (+) 1926 WP_329451911.1 ABC transporter ATP-binding protein Regulator
  OG987_RS13730 (OG987_13750) - 3038076..3039194 (-) 1119 WP_030970270.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62869.94 Da        Isoelectric Point: 5.5462

>NTDB_id=673290 OG987_RS13720 WP_406338322.1 3034401..3036134(+) (rcrP) [Streptomyces sp. NBC_01620]
MLIKLLRAYLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRAADFRYPGAEEPVLRSVEVVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673290 OG987_RS13720 WP_406338322.1 3034401..3036134(+) (rcrP) [Streptomyces sp. NBC_01620]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAAAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAAGGGGACACCGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTACCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCACTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGTTGACCGACGTGGCGCTCTCCACCGGGCGTCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAACGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCAAGCCGGTGCGGGAACTGCGCGCTCACGGTCATCTGGAGGTGCGGGCCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGAGGTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACACTGCTCGGCCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAACGACTC
GCGATCGCGAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGTCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.909

99.133

0.406