Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA23_RS06665 Genome accession   NZ_CP094816
Coordinates   1317906..1320296 (+) Length   796 a.a.
NCBI ID   WP_058592259.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312906..1325296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA23_RS06645 (MUA23_06635) sal(A) 1313213..1314838 (+) 1626 WP_262657613.1 ABC-F type ribosomal protection protein Sal(A) -
  MUA23_RS06650 (MUA23_06640) - 1314898..1316046 (+) 1149 WP_078355870.1 cysteine desulfurase family protein -
  MUA23_RS06655 (MUA23_06645) mnmA 1316039..1317148 (+) 1110 WP_048539659.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA23_RS06660 (MUA23_06650) - 1317235..1317903 (+) 669 WP_078355869.1 tetratricopeptide repeat protein -
  MUA23_RS06665 (MUA23_06655) recD2 1317906..1320296 (+) 2391 WP_058592259.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA23_RS06670 (MUA23_06660) alaS 1320546..1323176 (+) 2631 WP_106417554.1 alanine--tRNA ligase -
  MUA23_RS06675 (MUA23_06665) - 1323244..1323513 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  MUA23_RS06680 (MUA23_06670) ruvX 1323506..1323934 (+) 429 WP_058592364.1 Holliday junction resolvase RuvX -
  MUA23_RS06685 (MUA23_06675) - 1323954..1324259 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90409.63 Da        Isoelectric Point: 4.6363

>NTDB_id=673196 MUA23_RS06665 WP_058592259.1 1317906..1320296(+) (recD2) [Mammaliicoccus sciuri strain IVB6231]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDKDTRFLQYGDVEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVETDTESETETIQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=673196 MUA23_RS06665 WP_058592259.1 1317906..1320296(+) (recD2) [Mammaliicoccus sciuri strain IVB6231]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTGACAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGTATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCAAAACTTGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCAAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAAAATGGC
CACACATTTTTACCTGTTGATATATTGGTTAACGGTGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATAGAAATGAGTGAGGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTAAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACAGGACTAGAAGCGATGACGATTCATAGATTAATTGG
TTGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGACTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGACTTGGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTCGTAGAAAAGGTTGTACAAGGTGCG
GTTAATAAAGGTTATAATATGCAAGATATTCAAGTGCTAGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTGAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATAAAGATACAAGATTCCTTCAATATGGAGATGTTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTTGTCATTGTGGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGCTGTTCAATTCATAAATCACAAGGCTCGGAATTCCCAATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACTGGACTAACACGTGCGAAACAGTCACTTGTCGTG
TGCGGTGAAGAGCAAGCCTTTAACCAAGGTATCCAAACACTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAACGGATACTGAGTCTGAAACAGAAACTATACAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAATCGCCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.627

100

0.501