Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB56_RS01755 Genome accession   NZ_CP109277
Coordinates   362328..363350 (+) Length   340 a.a.
NCBI ID   WP_406358874.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01635     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 357328..368350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS01730 (OHB56_01730) - 358170..358973 (+) 804 Protein_344 transposase -
  OHB56_RS01735 (OHB56_01735) cynS 359381..359851 (-) 471 WP_326756818.1 cyanase -
  OHB56_RS01740 (OHB56_01740) - 360525..360869 (-) 345 WP_406351215.1 anti-sigma factor family protein -
  OHB56_RS01745 (OHB56_01745) - 361046..361210 (-) 165 WP_406351217.1 hypothetical protein -
  OHB56_RS01750 (OHB56_01750) - 361524..362237 (+) 714 WP_406351219.1 IS6 family transposase -
  OHB56_RS01755 (OHB56_01755) cytR 362328..363350 (+) 1023 WP_406358874.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB56_RS01760 (OHB56_01760) - 363617..364747 (+) 1131 WP_406351221.1 GH12 family glycosyl hydrolase domain-containing protein -
  OHB56_RS01765 (OHB56_01765) - 365015..366088 (+) 1074 WP_406351222.1 lytic polysaccharide monooxygenase -
  OHB56_RS01770 (OHB56_01770) - 366164..366577 (-) 414 WP_406351224.1 hypothetical protein -
  OHB56_RS01775 (OHB56_01775) - 366752..367402 (-) 651 WP_406351226.1 integrase core domain-containing protein -
  OHB56_RS01780 (OHB56_01780) - 367637..367810 (+) 174 WP_406351228.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36656.75 Da        Isoelectric Point: 5.3137

>NTDB_id=673079 OHB56_RS01755 WP_406358874.1 362328..363350(+) (cytR) [Streptomyces sp. NBC_01635]
MLRRRPGPPTLEEVAALAGVGRSTVSRVINNAAGVKDTTRRAVQRAIAELGYVPNLAARTLAGRRADAVALVMTEPDWRQ
FGEPFFSEIVRSVGDALTETEVQLLLTLVRTDAERQRLVEYARGGRVDGVMLMSVHAEDALPDMLAEVGLPTVLLGRRSG
DESVTYVDADNVGGARSAVAHLLDTGRRAVATITGPSDMYVAQCRLRGYREALERAGAEGRASWTVEGDFSADSGHRAMA
ELIDHAPEIDGVFAASDTMAAGALGALRAAGRRVPDDVAVIGFDDFPLAQLTDPKLTTVRQPLEEIGRTMVRLLLEEMEE
PAVAWRHVILRTKLVLRGSA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=673079 OHB56_RS01755 WP_406358874.1 362328..363350(+) (cytR) [Streptomyces sp. NBC_01635]
ATGCTCAGGCGGCGTCCGGGCCCACCGACGCTCGAGGAGGTGGCCGCGCTCGCCGGTGTGGGGCGGAGCACCGTCTCCCG
CGTCATCAACAACGCGGCGGGCGTGAAGGACACGACGCGCCGTGCTGTGCAGCGCGCCATCGCGGAACTGGGGTACGTCC
CCAACCTGGCGGCCCGTACGCTGGCGGGCCGGCGTGCCGACGCGGTCGCGCTGGTCATGACGGAGCCGGACTGGCGGCAG
TTCGGTGAACCCTTCTTCTCGGAGATCGTGCGGTCCGTCGGTGACGCGCTGACCGAGACCGAGGTGCAGTTGCTGCTCAC
CCTGGTGCGCACGGACGCCGAGCGGCAGCGTCTCGTGGAGTACGCGCGCGGCGGCCGGGTCGACGGCGTCATGCTGATGT
CCGTGCACGCCGAGGACGCGCTGCCCGACATGCTGGCCGAAGTGGGCCTGCCCACCGTCCTGCTGGGGCGGCGCTCCGGG
GACGAGAGTGTGACCTACGTCGACGCCGACAACGTCGGCGGGGCCCGCAGCGCCGTGGCGCATCTGCTGGATACCGGCCG
CCGCGCGGTCGCGACCATCACCGGACCGTCCGACATGTACGTGGCCCAGTGCCGGCTGCGCGGCTACCGGGAGGCGCTGG
AGCGGGCGGGTGCCGAGGGCAGGGCGTCCTGGACCGTCGAGGGCGACTTCTCCGCGGACAGCGGGCACCGGGCGATGGCC
GAACTCATCGATCATGCCCCGGAGATCGACGGGGTGTTCGCCGCGTCGGACACCATGGCCGCGGGCGCGCTGGGTGCCCT
GCGCGCGGCGGGGCGGCGGGTGCCGGACGATGTCGCGGTGATCGGTTTCGACGACTTTCCGCTCGCGCAGCTCACCGATC
CGAAGCTGACGACGGTGCGTCAGCCGCTGGAGGAGATCGGGCGCACGATGGTGCGGCTGCTCCTGGAGGAGATGGAGGAG
CCGGCGGTGGCCTGGCGGCACGTCATCCTCCGTACGAAGCTGGTGTTGCGCGGCTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

35.838

100

0.365