Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA95_RS05800 Genome accession   NZ_CP094809
Coordinates   1206498..1208870 (+) Length   790 a.a.
NCBI ID   WP_262626799.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201498..1213870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA95_RS05780 (MUA95_05770) - 1202299..1203309 (-) 1011 WP_262619407.1 LLM class flavin-dependent oxidoreductase -
  MUA95_RS05785 (MUA95_05775) - 1203530..1204669 (+) 1140 WP_262619409.1 cysteine desulfurase family protein -
  MUA95_RS05790 (MUA95_05780) mnmA 1204672..1205781 (+) 1110 WP_105995581.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA95_RS05795 (MUA95_05785) - 1205820..1206494 (+) 675 WP_107368566.1 tetratricopeptide repeat protein -
  MUA95_RS05800 (MUA95_05790) recD2 1206498..1208870 (+) 2373 WP_262626799.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA95_RS05805 (MUA95_05795) alaS 1209103..1211733 (+) 2631 WP_262626832.1 alanine--tRNA ligase -
  MUA95_RS05810 (MUA95_05800) - 1211797..1212069 (+) 273 WP_039645438.1 IreB family regulatory phosphoprotein -
  MUA95_RS05815 (MUA95_05805) ruvX 1212062..1212490 (+) 429 WP_037565451.1 Holliday junction resolvase RuvX -
  MUA95_RS05820 (MUA95_05810) - 1212505..1212825 (+) 321 WP_105995584.1 DUF1292 domain-containing protein -
  MUA95_RS05825 (MUA95_05815) - 1213156..1213800 (+) 645 WP_262619414.1 O-methyltransferase -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89385.46 Da        Isoelectric Point: 4.5722

>NTDB_id=673012 MUA95_RS05800 WP_262626799.1 1206498..1208870(+) (recD2) [Staphylococcus agnetis strain IVB6197]
MENPTLFEQSYIKGNIEVILFQNSDNYYTVLKVEVEDANEDFETMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTRDSIVQYLSSDLFKGVGKKTAESIVDTLGDNAIQSILNDASVLEQVPKLSKAKQQQIAEQVAQNQASEQIM
IRLNELGFGAKLAMDIYKFYKDETINVIDQNPYQLVYDIRGVGFQKADQLASLVGISYTHPNRLKAGIQYIVEEICIKQG
HTYLPKDTLMTESSTLLTKQHETTIDQTMLEDVLSQLIEEQRLINDNDYIAIPSLYYSELKSSQNIYKLMHNQVFMDTFD
QSDIQLQIGEIEESNGVTYAEAQKEALEAAMQNKMMILTGGPGTGKTTVIKGIVHLYAALHRISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDNEIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFKDLISSKSLKRINLKEVYRQQDGSSIIALAHNMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
NKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIENDDTREIHFGDIVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDSDAFNIGLKTEGQVRLTRQQSFLEQYFNSEETSIEVISLTEDTMYSIDPMINMQNVSPYDFMEIDNV

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=673012 MUA95_RS05800 WP_262626799.1 1206498..1208870(+) (recD2) [Staphylococcus agnetis strain IVB6197]
GTGGAAAACCCAACACTATTTGAACAGTCATATATCAAAGGGAACATCGAAGTCATTCTTTTTCAAAATAGTGATAATTA
CTATACGGTCCTCAAAGTAGAGGTTGAAGATGCTAATGAAGACTTTGAAACAATGGCAACAGTTGTTGGGTATTTTCCAA
ATATCGTAGAAGGCGAAACATATACTTTCAAAGGACAAGTAGCAGAACATCCACGGTACGGCAAACAATTAAAAGCGGAA
ACGTTTCAAAAAGAAATACCTCAAACGAGAGATTCTATTGTTCAATATTTATCAAGTGACCTGTTTAAAGGTGTGGGTAA
AAAAACAGCAGAATCCATTGTAGATACACTAGGTGATAATGCAATTCAGTCTATTTTAAATGACGCATCTGTTCTTGAAC
AAGTACCGAAATTGTCTAAAGCAAAGCAACAGCAAATTGCTGAACAAGTGGCTCAAAATCAAGCGAGTGAACAAATCATG
ATTCGCTTAAACGAACTTGGTTTTGGTGCGAAATTGGCCATGGATATTTATAAATTTTATAAGGATGAGACCATTAACGT
TATTGATCAAAATCCCTATCAACTCGTATATGATATACGTGGCGTTGGATTTCAAAAAGCTGATCAACTAGCAAGTTTAG
TAGGTATTTCGTATACACACCCTAATCGACTTAAAGCAGGGATTCAATACATTGTAGAAGAAATCTGTATTAAACAGGGG
CATACGTATTTACCTAAAGATACGTTAATGACTGAGTCTTCTACTTTACTTACTAAACAACATGAAACGACAATTGATCA
GACGATGCTTGAAGACGTGCTTAGTCAACTTATAGAAGAGCAGCGGTTGATTAATGATAACGATTATATCGCGATACCAA
GTTTGTATTATTCAGAACTTAAAAGTAGCCAAAATATCTATAAATTAATGCATAATCAAGTATTTATGGATACGTTTGAT
CAATCAGACATTCAATTACAAATTGGCGAAATTGAAGAATCAAATGGCGTGACTTATGCTGAGGCACAGAAAGAAGCACT
TGAAGCTGCAATGCAGAATAAAATGATGATTTTAACTGGTGGTCCAGGGACGGGTAAAACGACAGTAATCAAAGGGATTG
TACACCTCTATGCGGCCTTACATCGTATTTCTTTAAATTATGATGATTACGGAGATGAAGATTACCCCGTGGTCCTCGCA
GCACCTACTGGTCGTGCATCAAAAAGGCTACATGATGCGACGGGTCTTGAGGCTATGACGATTCATCGCTTGATAGGTTG
GAATCAAGATACCAAGCCAGAAGATATTCTTGATAATGAAATTCATGCAAAGCTTATCATTATTGACGAAATGTCAATGG
TGGATACATGGCTGTTTCATCAATTTATGGCAGCAGTTCCTGAAGATGCACAAGTTGTATTAGTTGGTGATGAGGATCAA
TTACCATCAGTAGGTCCAGGACAAGTATTTAAAGATTTAATCTCATCAAAATCATTAAAGCGCATTAATTTAAAAGAAGT
ATACCGCCAACAAGACGGGTCAAGTATCATTGCACTTGCACATAACATGAAGGCGGGTTTAAACGTAGATATTACCGAGC
GGTTTCATGATCGATCTTTTATTCCTTGTCATATTGATCAAATTCCAGAAGTTGTTCGTAAAGTCGTAACAAATGCTGTG
AATAAAGGTTACGATATGTCTGATATACAAGTACTTGCACCAATGTACCGTGGGAATGCTGGTATTCATAAGCTCAATAA
AGTCCTACAAGATATTTTAAATCCAATTGAAAACGATGATACAAGAGAAATACACTTTGGAGATATTGTGTACCGAAAAG
GTGACAAAGTACTTCAACTTGTTAATCGACCGAATGATAATATTTTTAATGGAGATATTGGTGTCATTGTTGGTATATTT
TGGGCGAAGGAAAATGCACTGAACAAAGATGTCGTCATTGTAGATTACGAAGGTAATGAGATTACGTATTTAAAATCGGA
TCTAACAGAATTAACACATGCGTATTGTACGTCGATTCATAAAGCACAAGGGTCAGAATTTCCAATCGTCATTATGCCGA
TAGTCAAGCAATATTTTCGGATGCTTCAAAAGCCAATTCTTTACACGGGATTAACCCGTGCAAAGCAATCACTTGTATTT
TTAGGAGATTCAGATGCTTTCAATATTGGCTTGAAAACGGAAGGGCAAGTGAGACTCACGCGGCAACAGTCCTTTTTAGA
ACAATATTTTAATTCTGAAGAGACATCGATTGAAGTCATTTCATTAACTGAAGACACAATGTATAGCATTGATCCAATGA
TTAATATGCAAAATGTAAGCCCATACGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.985

99.747

0.489