Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB03_RS14425 Genome accession   NZ_CP109266
Coordinates   3185748..3187481 (+) Length   577 a.a.
NCBI ID   WP_328627886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01643     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180748..3192481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB03_RS14395 (OHB03_14415) - 3182240..3182416 (-) 177 WP_406406009.1 hypothetical protein -
  OHB03_RS14415 (OHB03_14435) - 3183778..3184071 (+) 294 WP_406409057.1 YtxH domain-containing protein -
  OHB03_RS14420 (OHB03_14440) - 3184132..3185577 (+) 1446 WP_330244539.1 FGGY family carbohydrate kinase -
  OHB03_RS14425 (OHB03_14445) rcrP 3185748..3187481 (+) 1734 WP_328627886.1 ABC transporter ATP-binding protein Regulator
  OHB03_RS14430 (OHB03_14450) rcrQ 3187481..3189406 (+) 1926 WP_330244540.1 ABC transporter ATP-binding protein Regulator
  OHB03_RS14435 (OHB03_14455) - 3189423..3190550 (-) 1128 WP_330244541.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62824.83 Da        Isoelectric Point: 5.3818

>NTDB_id=672938 OHB03_RS14425 WP_328627886.1 3185748..3187481(+) (rcrP) [Streptomyces sp. NBC_01643]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILTYGGIMIAVSVAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGHVLVDGTDVR
TLEPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAESTVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672938 OHB03_RS14425 WP_328627886.1 3185748..3187481(+) (rcrP) [Streptomyces sp. NBC_01643]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTCCCCTCTCTCAACGCCGACATCATTGACAACGGTGTCGTGGAGGGGGACACCGGCTACA
TCCTGACGTACGGCGGCATCATGATCGCCGTCTCCGTCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGAACTGCGGCCGCACTGGGCCGGGATGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTACCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCATTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAAGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTACGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCGCGGCCCGGTGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGACTGTTCGATGTGACGGACGGTCACGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGACGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAACTGTGGCACGCACTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGACTC
GCGATCGCGAGGACGCTGGTGCAGCGACCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGCCGGGCACTGTCGCAGGAGACCGCCGAGTCGACCGTGGTGATCGTGGCTCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.44

100

0.414