Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA37_RS06140 Genome accession   NZ_CP094803
Coordinates   1269050..1271443 (+) Length   797 a.a.
NCBI ID   WP_262624904.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain IVB6235     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264050..1276443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA37_RS06120 (MUA37_06115) sal 1264157..1265791 (+) 1635 WP_262624902.1 Sal family ABC-F type ribosomal protection protein -
  MUA37_RS06125 (MUA37_06120) - 1265853..1266995 (+) 1143 WP_262624903.1 cysteine desulfurase family protein -
  MUA37_RS06130 (MUA37_06125) mnmA 1266997..1268109 (+) 1113 WP_232192065.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA37_RS06135 (MUA37_06130) - 1268381..1269046 (+) 666 WP_021459900.1 tetratricopeptide repeat protein -
  MUA37_RS06140 (MUA37_06135) recD2 1269050..1271443 (+) 2394 WP_262624904.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA37_RS06145 (MUA37_06140) alaS 1271765..1274395 (+) 2631 WP_002510465.1 alanine--tRNA ligase -
  MUA37_RS06150 (MUA37_06145) - 1274460..1274723 (+) 264 WP_002510466.1 IreB family regulatory phosphoprotein -
  MUA37_RS06155 (MUA37_06150) ruvX 1274726..1275154 (+) 429 WP_021459902.1 Holliday junction resolvase RuvX -
  MUA37_RS06160 (MUA37_06155) - 1275171..1275503 (+) 333 WP_262624905.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89324.00 Da        Isoelectric Point: 4.4374

>NTDB_id=672916 MUA37_RS06140 WP_262624904.1 1269050..1271443(+) (recD2) [Staphylococcus arlettae strain IVB6235]
MADPTLFNYSMIKGTVDAILFQNKDNLYTVLKVDTIETNESLDSMPTVVGFFPEIVEGDVYTFKGQIATHPKYGKQLKAD
IFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAIADILNDSQVLSKVPSLSASKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMNIYQAYLGETLNVVEKTPYQLVYDVKGIGFNKADMLAKNIGIQYNDPERLKAGILYILEEECIKQG
HTYLPTQFVLELVQDILSNPPSEVIDQSILANQVEQLVNEDKLVQQEAELAIPSLYYSEIKSVQNLYRNFTYTKKLKDIE
MSDLLLEIGNIEDQNTVSYAESQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKEDDYPIVLG
APTGRASKRLAEATGLEAMTIHRLIGWNQETQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFMSAVPLDAQVILVGDEDQ
LPSVGPGQVFKDLIDSGVIPRVNLTEVYRQQDGSSIIELAHKIKLGLPIDITERFHDRNFINCQTEQIPQVVEKVVASAV
NKGYDMSDIQVLAPMYKGSAGIKRLNQVLQDILNPKIKDTREIAFGEVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALDKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPNAFTIGLKTNGQVRMTQLCDLLQAYFDSDSGKDDDQEDINQQLNSTVTLTESTIYQIDPMINMGQLSPYDFVND

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=672916 MUA37_RS06140 WP_262624904.1 1269050..1271443(+) (recD2) [Staphylococcus arlettae strain IVB6235]
ATGGCAGATCCTACACTGTTTAACTATTCAATGATTAAAGGTACAGTAGATGCTATTTTGTTTCAAAACAAAGATAATTT
GTATACTGTATTAAAAGTTGATACAATTGAAACCAATGAATCATTAGATAGTATGCCTACAGTTGTAGGGTTCTTTCCTG
AAATTGTGGAAGGTGATGTCTATACATTTAAAGGGCAAATAGCTACGCATCCTAAATATGGTAAACAATTAAAAGCAGAT
ATTTTTGAAAAGGAATTACCACAAACGAAGGAAGCAATTATCAGTTATTTGTCTAGTGACTTATTCAAAGGTATTGGTAA
AAAGACGGCTCAAAATATTGTTAATACACTCGGTGAAAATGCCATTGCTGATATATTAAACGATTCACAAGTTTTAAGTA
AGGTGCCGAGTTTATCTGCAAGCAAACAAAAACAAATTGCAGAACAAATTGCTAGCAACCAAGAAACAGAACAAATAATA
ATTAGATTACATGACTTAGGCTTTGGGCCGAAGTTAGCAATGAATATATACCAAGCTTATTTAGGTGAAACACTCAATGT
AGTAGAAAAGACACCTTACCAATTAGTATATGATGTCAAGGGTATTGGTTTTAATAAAGCTGATATGTTAGCCAAAAATA
TCGGTATTCAATATAACGATCCAGAACGTTTAAAAGCAGGAATACTCTATATACTAGAAGAAGAGTGTATTAAACAAGGA
CATACCTATTTACCTACGCAATTTGTTTTAGAATTGGTACAGGATATTTTATCTAATCCTCCATCTGAAGTCATAGATCA
ATCGATATTAGCTAATCAAGTTGAACAGCTAGTCAATGAAGATAAATTAGTACAGCAAGAAGCTGAATTAGCTATTCCAA
GTTTGTATTATTCAGAAATAAAGAGTGTCCAAAATTTATATCGCAATTTCACGTACACTAAAAAATTGAAAGATATTGAA
ATGTCCGACTTATTATTAGAAATTGGTAATATAGAGGACCAAAATACAGTCAGTTATGCTGAATCACAAAAAGAAGCACT
ACAAACCGCTATTAATTCAAAAGTGATGTTATTAACAGGAGGACCTGGTACAGGGAAAACAACTGTAATAAAAGGCATCG
TAGAATTGTATGCTGAAATACATGGCCTTTCTTTAGATTATGACGATTATAAAGAAGATGATTATCCTATTGTGTTAGGT
GCTCCGACAGGGCGAGCGTCTAAACGATTAGCTGAAGCTACAGGATTAGAAGCTATGACCATTCACCGACTTATTGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAAGGCTAAATTGATTATTATAGATGAGATGTCGATGG
TAGATACTTGGTTATTTCATCAATTTATGAGTGCAGTACCGTTAGATGCACAAGTCATTTTAGTTGGTGATGAGGATCAA
TTACCGTCAGTTGGTCCCGGACAAGTCTTTAAAGATTTAATTGACTCTGGAGTTATTCCTAGAGTTAATTTAACTGAAGT
ATATAGACAGCAAGATGGATCTAGTATTATAGAGTTAGCGCATAAAATTAAATTGGGGTTACCAATAGATATTACCGAGC
GTTTTCATGACCGTAATTTTATCAACTGTCAAACAGAACAAATACCACAAGTTGTTGAAAAAGTTGTAGCTAGTGCTGTT
AACAAAGGGTATGATATGAGTGATATTCAAGTATTAGCACCTATGTACAAAGGTTCTGCAGGCATTAAGCGATTAAATCA
AGTATTACAAGATATATTAAATCCAAAAATAAAAGATACGCGTGAAATTGCATTTGGTGAAGTTTTATTTAGAAAAGGCG
ATAAAGTATTGCAATTGGTTAATAGACCAAATGATAATATTTTTAATGGAGATATCGGAGTAATTGTAGGTATTTTTTGG
GCTAAAGAAAATGCCTTAGATAAAGATGTATTAGTGGTTGATTTTGAAGGTAATGAGATAACATTTACACGACAAGATTT
AATGGAATTAACACATGCTTATTGTACATCTATCCATAAATCACAAGGTTCTGAATTTCCAATTGTCATTATGCCTATGG
TAAAACAGTATTTCAGAATGTTACAAAAGCCTATTTTGTATACAGGTCTGACACGTGCAAAACAATCATTGGTCTTTTTA
GGTGATCCCAATGCATTTACAATTGGTTTAAAGACAAATGGTCAAGTAAGAATGACTCAATTATGTGACTTACTGCAAGC
TTACTTTGATAGTGACTCAGGTAAAGATGATGACCAAGAAGATATTAACCAGCAACTTAATAGTACAGTTACTTTGACTG
AGAGTACCATATATCAAATTGACCCAATGATTAATATGGGGCAATTATCACCATATGACTTCGTAAATGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.692

99.749

0.506