Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG810_RS24830 Genome accession   NZ_CP109202
Coordinates   5484304..5486037 (-) Length   577 a.a.
NCBI ID   WP_329421324.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01693     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5479304..5491037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG810_RS24815 (OG810_24775) - 5481018..5482094 (+) 1077 WP_099172462.1 RNA polymerase sigma factor -
  OG810_RS24820 (OG810_24780) - 5482122..5482268 (-) 147 WP_164992674.1 hypothetical protein -
  OG810_RS24825 (OG810_24785) - 5482382..5484304 (-) 1923 WP_129262776.1 ABC transporter ATP-binding protein -
  OG810_RS24830 (OG810_24790) rcrP 5484304..5486037 (-) 1734 WP_329421324.1 ABC transporter ATP-binding protein Regulator
  OG810_RS24835 (OG810_24795) - 5486149..5487594 (-) 1446 WP_124276591.1 FGGY family carbohydrate kinase -
  OG810_RS24840 (OG810_24800) - 5487870..5488181 (-) 312 WP_147985161.1 YtxH domain-containing protein -
  OG810_RS24860 (OG810_24820) - 5489298..5489426 (-) 129 WP_261988400.1 hypothetical protein -
  OG810_RS24865 (OG810_24825) - 5489683..5490159 (-) 477 WP_329421327.1 peroxiredoxin -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62817.18 Da        Isoelectric Point: 6.1944

>NTDB_id=672654 OG810_RS24830 WP_329421324.1 5484304..5486037(-) (rcrP) [Streptomyces sp. NBC_01693]
MLIKLLRTCLGPYRRPIMLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILQFGAMMIAVSVIQIVCNVGAVYYGA
RTASALGRDVRALIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVALIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFIRDDYEEKRFREANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672654 OG810_RS24830 WP_329421324.1 5484304..5486037(-) (rcrP) [Streptomyces sp. NBC_01693]
GTGCTCATAAAACTCCTGCGGACCTGTCTGGGTCCGTACAGACGTCCCATCATGCTGCTGGTACTGCTCCAGCTCCTGCA
GACCTGTGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGCAATTCGGCGCCATGATGATCGCCGTCAGCGTCATCCAGATCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCCTCCGCCCTGGGACGCGACGTACGCGCACTGATATTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTGGG
GCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGTGTCTCGGTGGCCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGGGAGCAGATCACCGGCAACCGTGTCATCCGGGCGTTCATCCGTGACG
ACTACGAGGAAAAACGCTTCCGCGAGGCCAACACGGAGCTGACGGACGTCGCGGTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATAGGCGCGCTCACGGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCAAGCACGGTCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTCCGCTCGGTCGACCTGGTGGCGCGGCCCGGGGAGACCACGGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAACACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGTGCGCTGTCCCGTGAGACGGCGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGTCGGGCAGCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411