Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG810_RS23665 Genome accession   NZ_CP109202
Coordinates   5200794..5203025 (+) Length   743 a.a.
NCBI ID   WP_124277190.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01693     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5195794..5208025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG810_RS23635 (OG810_23595) - 5196414..5197715 (+) 1302 WP_261988388.1 hydrogenase expression protein HypA -
  OG810_RS23640 (OG810_23600) - 5197895..5198278 (-) 384 WP_124276406.1 VOC family protein -
  OG810_RS23645 (OG810_23605) - 5198380..5198751 (-) 372 WP_147985055.1 hypothetical protein -
  OG810_RS23650 (OG810_23610) - 5198767..5199378 (-) 612 WP_319336658.1 ATP-binding protein -
  OG810_RS23655 (OG810_23615) - 5199511..5200248 (-) 738 WP_319336660.1 class I SAM-dependent methyltransferase -
  OG810_RS23660 (OG810_23620) - 5200287..5200622 (-) 336 WP_319223321.1 hypothetical protein -
  OG810_RS23665 (OG810_23625) recD/recD2/recDB 5200794..5203025 (+) 2232 WP_124277190.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG810_RS23670 (OG810_23630) - 5203223..5204521 (+) 1299 WP_073746777.1 citrate synthase -
  OG810_RS23675 (OG810_23635) - 5205059..5207560 (-) 2502 WP_329421189.1 heavy metal translocating P-type ATPase -
  OG810_RS23680 (OG810_23640) - 5207718..5208023 (-) 306 WP_124276412.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80082.76 Da        Isoelectric Point: 6.2679

>NTDB_id=672650 OG810_RS23665 WP_124277190.1 5200794..5203025(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01693]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGNCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEDGQPVTAVYLVPFHRAELSLAAQVRRLLRAPEDRMPAFGDVD
WDKALTWLAGRTGATLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLIKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTGLDADEQRLTVLT
DEDEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGVPEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=672650 OG810_RS23665 WP_124277190.1 5200794..5203025(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01693]
ATGCCGAACATGGCTGTCCTCGAAGGCGTCCTGGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
CGTCGACACCGGGCGCGGTGCGGGCGACCTGCTGACCGTCGTCGGGTCGCTGCTCGGGGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGGCTCCCACCCGCAGTTCGGCAAGCAGTTCACCGTCGAGAACTACACCACGATCCTTCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGGCCCGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTCGTCGAGGTGCCCGGGCTCGGGCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGAGTGTCGGGGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGTCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCAACTGCTTCCTCCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTGCAGGTCGACACCGGGCTGGTCATCGACTGCCTGGCCGAGCTCGCCGAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGGCAGCCGGTGACCGCCGTCTACCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTCAGGCGCCTGCTGCGGGCGCCGGAGGACCGGATGCCGGCCTTCGGGGACGTCGAC
TGGGACAAGGCGCTGACCTGGCTCGCCGGACGTACGGGGGCGACCCTGGCACCCGAGCAGGAGGCGGCCGTCCGGCTCGC
CCTCACCGAGAAGGTCGCCGTGCTGACGGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGCTCCGTCGTCGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTGCTGGCCGCCCCCACCGGGCGGGCCGCGAAGCGCCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACCGCGACCGTCCGCTGGATGC
CGACCTGGTCGTCGTGGACGAGGCCTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCATCAAGGCCGTGGCACCCGGTG
CCCACCTCCTGCTGGTCGGTGATGTGGACCAGCTGCCGTCGGTCGGCGCAGGGGAGGTGTTGAGGGACCTGCTCGCCGAG
GGCGGCCCGGTCCCGGCGGTCCGGCTGACCACCATCTTCCGGCAGGCGCAGAAGTCGGGCGTCGTCACCAACGCCCACCG
GATCAACTCCGGGGTGCCGCCGCTGACCCAGGGCCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTCCTCGCCGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTGAACCCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGTGGCCCGGCAGGCGCGGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGG
TCTGCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACGCAGATTCGGAACAACTACGACAAAG
GGGAGAACGGGGTATTCAACGGTACGGTCGGTGTCGTCACCGGCCTCGACGCGGACGAGCAGCGGCTGACGGTTCTCACG
GACGAGGACGAGGAGATCGCGTACGACTTCGACGAACTGGACGAACTCGCCCATGCCTACGCGATGACCATCCACCGCTC
GCAGGGCAGCGAATACCCGGCGGTCGTCATCCCGGTGACCACCAGCGCCTGGATGATGCTGCAACGGAACCTGCTGTACA
CGGCGGTGACGCGGGCCAAGAAGCTGGTCGTGCTGGTCGGTTCGCGCAAGGCCATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGCTGCACGGCACTGGATTTCCGGCTGCGTGGCGGGGTGCCCGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(335-514)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.363