Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SITYG_RS06805 Genome accession   NZ_AP014880
Coordinates   1344416..1345261 (-) Length   281 a.a.
NCBI ID   WP_096363001.1    Uniprot ID   A0AAD1FJN0
Organism   Streptococcus intermedius strain TYG1620     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1339416..1350261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS06795 (SITYG_13420) - 1340747..1342516 (-) 1770 WP_096363000.1 ABC transporter ATP-binding protein -
  SITYG_RS06800 (SITYG_13430) - 1342526..1344262 (-) 1737 WP_082312263.1 ABC transporter ATP-binding protein -
  SITYG_RS06805 (SITYG_13440) endA 1344416..1345261 (-) 846 WP_096363001.1 DNA/RNA non-specific endonuclease Machinery gene
  SITYG_RS06810 (SITYG_13450) - 1345324..1345500 (-) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SITYG_RS06815 (SITYG_13460) murA 1345493..1346773 (-) 1281 WP_096363002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SITYG_RS06820 (SITYG_13470) - 1346811..1347041 (-) 231 WP_014829739.1 DUF1146 family protein -
  SITYG_RS06825 (SITYG_13480) - 1347143..1347562 (-) 420 WP_003072157.1 F0F1 ATP synthase subunit epsilon -
  SITYG_RS06830 (SITYG_13490) atpD 1347573..1348979 (-) 1407 WP_096363003.1 F0F1 ATP synthase subunit beta -
  SITYG_RS06835 (SITYG_13500) - 1349014..1349892 (-) 879 WP_003069751.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30608.25 Da        Isoelectric Point: 10.3874

>NTDB_id=67263 SITYG_RS06805 WP_096363001.1 1344416..1345261(-) (endA) [Streptococcus intermedius strain TYG1620]
MAQRKSNQKVIQSVIGGIIALSLALGAYYFRANNNGTVHQDSSAINKSLGQHHAGPSKDLAQSVLTGNVRSQFKGKIEWN
GAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGEYH
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANASHSTGQNFYETKVRKALDKNKRVRYRVTLIYASEQDLV
PVGSHIEAKSSDGSLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=67263 SITYG_RS06805 WP_096363001.1 1344416..1345261(-) (endA) [Streptococcus intermedius strain TYG1620]
ATGGCGCAGAGAAAATCCAATCAAAAAGTAATACAGAGTGTTATTGGAGGGATTATTGCACTTAGTTTAGCTCTTGGTGC
TTATTATTTTCGAGCAAATAATAATGGTACAGTTCATCAAGATAGTTCTGCCATTAACAAAAGTCTCGGGCAACATCATG
CGGGTCCTAGTAAAGATCTGGCTCAGAGTGTATTGACAGGTAATGTGCGTTCACAATTTAAAGGGAAAATCGAGTGGAAT
GGCGCAGGAGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGAAGTATTCCTTATGCGGATAATAA
GACAAAATTGGTCAGAGGTCGAACTGTTCCGACGGTAGCAAATGCTCTTTTGTCCAAAGCTACTCGTCAGTATAGGAATC
GTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAAGTGAAGCATTTATCGGGTGAATATCAT
CATGCAGTTGACCGTGGACATCTGCTAGGCTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACTAGTAATCC
CAAAAATATTGCGGTGCAAACGGCTTGGGCGAATCAAGCAAATGCTAGCCATTCTACAGGTCAAAATTTTTATGAAACGA
AAGTACGTAAAGCTCTTGATAAAAATAAACGAGTTCGGTATCGAGTGACCTTGATTTACGCAAGTGAGCAGGATTTAGTA
CCAGTTGGTTCACATATTGAAGCCAAGTCTAGCGACGGTAGTTTGGAAATAAATGTCTTTGTGCCAAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACGGTCACCAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.613

97.509

0.669
  endA Streptococcus pneumoniae D39

68.613

97.509

0.669
  endA Streptococcus pneumoniae R6

68.613

97.509

0.669
  endA Streptococcus pneumoniae TIGR4

68.613

97.509

0.669

Multiple sequence alignment