Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG893_RS11005 Genome accession   NZ_CP109200
Coordinates   2372584..2374317 (+) Length   577 a.a.
NCBI ID   WP_329205554.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01696     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367584..2379317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG893_RS10970 (OG893_10965) - 2368165..2368719 (-) 555 WP_329042528.1 TIGR03086 family metal-binding protein -
  OG893_RS10975 (OG893_10970) - 2368948..2369185 (-) 238 Protein_2177 deaminase -
  OG893_RS10995 (OG893_10990) - 2370417..2370728 (+) 312 WP_147985161.1 YtxH domain-containing protein -
  OG893_RS11000 (OG893_10995) - 2371027..2372472 (+) 1446 WP_329205553.1 FGGY family carbohydrate kinase -
  OG893_RS11005 (OG893_11000) rcrP 2372584..2374317 (+) 1734 WP_329205554.1 ABC transporter ATP-binding protein Regulator
  OG893_RS11010 (OG893_11005) - 2374317..2376239 (+) 1923 WP_329205556.1 ABC transporter ATP-binding protein -
  OG893_RS11015 (OG893_11010) - 2376257..2377333 (-) 1077 WP_099172462.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62846.31 Da        Isoelectric Point: 6.6151

>NTDB_id=672536 OG893_RS11005 WP_329205554.1 2372584..2374317(+) (rcrP) [Streptomyces sp. NBC_01696]
MLIKLLRTCLGPYRRPIMLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILQFGAMMIAVSIIQIVCNVGAVYYGA
RTASALGRDVRALIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVALIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFIRDDYEEKRFREANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVL
PTAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVKRLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672536 OG893_RS11005 WP_329205554.1 2372584..2374317(+) (rcrP) [Streptomyces sp. NBC_01696]
GTGCTCATAAAACTCCTGCGGACCTGTCTGGGTCCGTACAGACGTCCCATCATGCTGCTGGTACTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGCAATTCGGCGCCATGATGATCGCCGTCAGCATCATCCAGATCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCCTCCGCCCTGGGGCGCGACGTACGCGCACTGATATTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTGGG
GCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGTGTCTCGGTGGCCCTCATCGTGAGGCGGATGCGACCGCTGTTCCGGACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGGGAGCAGATCACCGGCAACCGTGTCATCCGGGCGTTCATCCGTGACG
ACTACGAGGAAAAGCGCTTCCGCGAAGCCAACACGGAGCTGACGGACGTCGCGGTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATAGGCGCGCTCACGGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCTG
CCCACCGCCCCGGTCACGAAGCTGCTCAAGCACGGCCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTCCGCTCGGTCGACCTGGTGGCGCGGCCCGGGGAGACCACGGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCTTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGAAGCGGCTGGAACACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGAGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGTGCGCTGTCCCGTGAGACGGCGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGTCGGGCAGCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409