Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE83_RS24555 Genome accession   NZ_CP109188
Coordinates   5429543..5431276 (-) Length   577 a.a.
NCBI ID   WP_147985160.1    Uniprot ID   A0ABU8A017
Organism   Streptomyces sp. NBC_01708     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5424543..5436276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS24545 (OIE83_24535) - 5426527..5427603 (+) 1077 WP_099172462.1 RNA polymerase sigma factor -
  OIE83_RS24550 (OIE83_24540) - 5427621..5429543 (-) 1923 WP_329042533.1 ABC transporter ATP-binding protein -
  OIE83_RS24555 (OIE83_24545) rcrP 5429543..5431276 (-) 1734 WP_147985160.1 ABC transporter ATP-binding protein Regulator
  OIE83_RS24560 (OIE83_24550) - 5431388..5432833 (-) 1446 WP_124276591.1 FGGY family carbohydrate kinase -
  OIE83_RS24565 (OIE83_24555) - 5433110..5433412 (-) 303 WP_099172458.1 hypothetical protein -
  OIE83_RS24585 (OIE83_24575) - 5434653..5434890 (+) 238 Protein_4843 deaminase -
  OIE83_RS24590 (OIE83_24580) - 5435119..5435673 (+) 555 WP_329042528.1 TIGR03086 family metal-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62831.21 Da        Isoelectric Point: 6.1944

>NTDB_id=672410 OIE83_RS24555 WP_147985160.1 5429543..5431276(-) (rcrP) [Streptomyces sp. NBC_01708]
MLIKLLRTCLGPYRRPIMLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILQFGAMMIAVSIIQIVCNVGAVYYGA
RTASALGRDVRALIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVALIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFIRDDYEEKRFREANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PTAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672410 OIE83_RS24555 WP_147985160.1 5429543..5431276(-) (rcrP) [Streptomyces sp. NBC_01708]
GTGCTCATAAAACTCCTGCGGACCTGTCTGGGTCCGTACAGACGTCCCATCATGCTGCTGGTACTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGCAATTCGGCGCCATGATGATCGCCGTCAGCATCATCCAGATCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCCTCCGCCCTGGGGCGCGACGTACGCGCACTGATATTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTGGG
GCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGTGTCTCGGTGGCCCTCATCGTGAGGCGGATGCGACCGCTGTTCCGGACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGGGAGCAGATCACCGGCAACCGTGTCATCCGGGCGTTCATCCGTGACG
ACTACGAGGAAAAGCGCTTCCGCGAAGCCAACACGGAGCTGACGGACGTCGCGGTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATAGGCGCGCTCACGGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCACCGCCCCGGTCACGAAGCTGCTCAAGCACGGCCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTCCGCTCGGTCGACCTGGTGGCGCGGCCCGGGGAGACCACGGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAACACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGAGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGTGCGCTGTCCCGTGAGACGGCGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGTCGGGCAGCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411