Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OIE83_RS23390 Genome accession   NZ_CP109188
Coordinates   5146190..5148421 (+) Length   743 a.a.
NCBI ID   WP_329212147.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01708     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5141190..5153421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS23360 (OIE83_23350) - 5141723..5143111 (+) 1389 WP_329210994.1 hydrogenase expression protein HypA -
  OIE83_RS23365 (OIE83_23355) - 5143291..5143674 (-) 384 WP_329210996.1 VOC family protein -
  OIE83_RS23370 (OIE83_23360) - 5143776..5144147 (-) 372 WP_329210998.1 hypothetical protein -
  OIE83_RS23375 (OIE83_23365) - 5144163..5144774 (-) 612 WP_319336658.1 ATP-binding protein -
  OIE83_RS23380 (OIE83_23370) - 5144907..5145644 (-) 738 WP_319336660.1 class I SAM-dependent methyltransferase -
  OIE83_RS23385 (OIE83_23375) - 5145683..5146018 (-) 336 WP_319223321.1 hypothetical protein -
  OIE83_RS23390 (OIE83_23380) recD/recD2/recDB 5146190..5148421 (+) 2232 WP_329212147.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OIE83_RS23395 (OIE83_23385) - 5148619..5149917 (+) 1299 WP_073746777.1 citrate synthase -
  OIE83_RS23400 (OIE83_23390) - 5150455..5152965 (-) 2511 WP_329211000.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80095.80 Da        Isoelectric Point: 6.3946

>NTDB_id=672406 OIE83_RS23390 WP_329212147.1 5146190..5148421(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01708]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGNCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEDGQPVTAVYLVPFHRAELSLAAQVRRLLRAPEDRMPAFGDVD
WEKALTWLAGRTGATLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLIKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTGLDADEQRLTVLT
DEDEEIAYNFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGVPEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=672406 OIE83_RS23390 WP_329212147.1 5146190..5148421(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01708]
ATGCCGAACATGGCTGTCCTCGAAGGCGTCCTGGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
CGTCGACACCGGGCGCGGTGCGGGCGACCTGCTGACCGTCGTCGGGTCGCTGCTCGGGGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGGCTCCCACCCGCAGTTCGGCAAGCAGTTCACCGTCGAGAACTACACCACGATCCTTCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGGCCCGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTCGTCGAGGTGCCCGGGCTCGGGCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGAGTGTCGGGGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGTCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCAACTGCTTCCTCCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTGCAGGTCGACACCGGGCTGGTCATCGACTGCCTGGCCGAGCTCGCCGAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGGCAGCCGGTGACCGCCGTCTACCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTCCGGCGCCTGCTGCGGGCGCCGGAGGACCGGATGCCGGCCTTCGGGGACGTCGAC
TGGGAGAAGGCGCTGACCTGGCTCGCCGGACGTACGGGGGCGACCCTGGCACCCGAGCAGGAGGCGGCCGTCCGGCTCGC
CCTCACCGAGAAGGTCGCCGTGCTGACGGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGCTCCGTCGTCGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTGCTGGCCGCCCCCACCGGGCGGGCCGCGAAGCGCCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACCGCGACCGTCCGCTGGACGC
CGACCTGGTCGTCGTGGACGAGGCCTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCATCAAGGCCGTGGCACCCGGTG
CCCACCTCCTGCTGGTCGGCGATGTCGACCAGCTGCCGTCGGTCGGCGCAGGGGAGGTGCTGAGGGACCTGCTCGCCGAG
GGCGGCCCGGTCCCGGCGGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCGGGCGTCGTCACCAACGCCCACCG
GATCAACTCCGGGGTGCCGCCGCTGACCCAGGGCCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTCCTCGCCGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTGAACCCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGTGGCCCGGCAGGCGCGGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGG
TCTGCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACGCAGATTCGGAACAACTACGACAAAG
GGGAGAACGGGGTATTCAACGGTACGGTCGGTGTCGTCACCGGCCTCGACGCGGACGAGCAGCGGCTGACGGTTCTCACG
GACGAGGACGAGGAGATCGCGTACAACTTCGACGAACTGGACGAACTCGCCCATGCCTACGCGATGACCATCCACCGCTC
GCAGGGCAGCGAATACCCGGCGGTCGTCATCCCGGTGACCACCAGCGCCTGGATGATGCTGCAACGGAACCTGCTGTACA
CGGCGGTGACGCGGGCCAAGAAGCTGGTCGTGCTGGTCGGTTCGCGCAAGGCCATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGCTGCACGGCACTGGATTTCCGGCTGCGTGGCGGGGTGCCCGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(335-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.363