Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE77_RS28305 Genome accession   NZ_CP109182
Coordinates   6663353..6665281 (-) Length   642 a.a.
NCBI ID   WP_148013846.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01715     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6658353..6670281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE77_RS28290 (OIE77_28290) - 6658475..6659740 (+) 1266 WP_148013849.1 FAD-dependent oxidoreductase -
  OIE77_RS28295 (OIE77_28295) dnaG 6659787..6661697 (+) 1911 WP_148013848.1 DNA primase -
  OIE77_RS28300 (OIE77_28300) - 6661945..6663240 (+) 1296 WP_148013847.1 sigma-70 family RNA polymerase sigma factor -
  OIE77_RS28305 (OIE77_28305) rcrQ 6663353..6665281 (-) 1929 WP_148013846.1 ABC transporter ATP-binding protein Regulator
  OIE77_RS28310 (OIE77_28310) rcrP 6665281..6667014 (-) 1734 WP_148013845.1 ABC transporter ATP-binding protein Regulator
  OIE77_RS28315 (OIE77_28315) - 6667222..6668676 (-) 1455 WP_148013844.1 FGGY family carbohydrate kinase -
  OIE77_RS28320 (OIE77_28320) - 6668847..6669152 (-) 306 WP_148013843.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69282.77 Da        Isoelectric Point: 5.9064

>NTDB_id=672323 OIE77_RS28305 WP_148013846.1 6663353..6665281(-) (rcrQ) [Streptomyces sp. NBC_01715]
MAGPMGRMMAGGGPDQRSLDFKGSGKRLLAQFRPERVTLYVMLCAVVLSVGLSVIGPKILGKATDLVFAGIIGRQMPAGA
SKAEVLAGMRARGDGSMADMLSGTDFTPGKGIDFGAVGDVLLLALCTFLVAGLLMAVATRLVNRAVNKTVYHMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDLDNIQQTLQQSMGQLVNSLLTIVGVLTVMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEELYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANMVQSGVASAERVFELLDAEEQAADPVPAARPDELRGRVALQ
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIASMSRDELRSAIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=672323 OIE77_RS28305 WP_148013846.1 6663353..6665281(-) (rcrQ) [Streptomyces sp. NBC_01715]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCACTGGACTTCAAGGGATCCGGGAAACG
GCTCCTGGCGCAGTTCCGGCCCGAGCGCGTCACCCTGTACGTGATGCTCTGCGCGGTGGTGCTGAGCGTGGGCCTCTCGG
TGATCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGGGCC
AGCAAGGCCGAGGTCCTCGCGGGCATGCGCGCGCGAGGCGACGGCAGCATGGCCGACATGCTCTCGGGGACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGCGCCGTCGGCGACGTACTGCTGCTCGCGCTCTGTACGTTCCTGGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCGGTCAACAAGACCGTCTACCACATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCGCGCGCCACGAACGACCTGGACAA
CATCCAGCAGACGCTGCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCACGGTGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTCGTCGCGCTGGTCACCGTGCCCCTCTCGTTCTTCGTCGCCACCCGTATCGGGAAG
CGCTCGCAGCCTCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGACGCCAGGAGGAGTCGGCCGCGCAGTTCGCGGAGCAGAACGAGGAGCTCTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGGGTCGCGTCGGGTTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACATGGTGCAGTCCGGGGTCGCGTCGGCGGAGCGGGTCTTCGAAC
TGCTGGACGCGGAGGAGCAGGCGGCGGACCCCGTGCCGGCGGCGCGCCCGGACGAGCTGCGCGGGCGGGTGGCACTGCAG
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCCCTCAAGGTCGAGCCCGGACACACGGTGGC
CATCGTCGGCCCGACCGGTGCGGGCAAGACGACGCTGGTGAACCTGCTGATGCGTTTCTACGACGTCACGGGCGGCCGGA
TCACCCTCGACGGCGTCGACATCGCCTCGATGTCGCGGGACGAACTGCGATCCGCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGCGAGGTGACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTCCGGACGCTGCCGGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGCGCGTTCCTGTCCGATCCGGTGATCCTCGTCCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGCACGTCGTT
CGTGATCGCCCACCGGCTCTCCACGATCCGGGACGCGGACACCATCCTCGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GCGCGCACGCGGAACTGCTCGCGGCGGGCGGGGCGTACGCGCGGCTGTACCAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.806

96.262

0.383