Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB49_RS28430 Genome accession   NZ_CP109178
Coordinates   6311621..6313354 (-) Length   577 a.a.
NCBI ID   WP_329163880.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01717     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6306621..6318354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB49_RS28420 (OHB49_28460) - 6308561..6309679 (+) 1119 WP_329163879.1 RNA polymerase sigma factor -
  OHB49_RS28425 (OHB49_28465) rcrQ 6309696..6311621 (-) 1926 WP_030970271.1 ABC transporter ATP-binding protein Regulator
  OHB49_RS28430 (OHB49_28470) rcrP 6311621..6313354 (-) 1734 WP_329163880.1 ABC transporter ATP-binding protein Regulator
  OHB49_RS28435 (OHB49_28475) - 6313582..6315027 (-) 1446 WP_329163881.1 FGGY family carbohydrate kinase -
  OHB49_RS28440 (OHB49_28480) - 6315088..6315393 (-) 306 WP_329166651.1 YtxH domain-containing protein -
  OHB49_RS28460 (OHB49_28500) - 6316773..6316967 (+) 195 WP_329163882.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62899.97 Da        Isoelectric Point: 5.5440

>NTDB_id=672158 OHB49_RS28430 WP_329163880.1 6311621..6313354(-) (rcrP) [Streptomyces sp. NBC_01717]
MLIKLLRAYLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRTADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672158 OHB49_RS28430 WP_329163880.1 6311621..6313354(-) (rcrP) [Streptomyces sp. NBC_01717]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAAAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAAGGGGACACCGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCGCTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGAACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAACGCATCCAGGAGGTGCTGGAGACCGACTCGAGCGTGGTGCCG
CCGGTCAAGCCGGTGCGGGAACTGCGCGCTCACGGTCATCTGGAGGTGCGGACCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACACTGCTCGGCCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAACTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGACTC
GCGATCGCGAGGACGCTGGTGCAGCGACCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGCCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.909

99.133

0.406