Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG957_RS36770 Genome accession   NZ_CP109174
Coordinates   8256588..8257574 (+) Length   328 a.a.
NCBI ID   WP_371797369.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01718     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8251588..8262574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS36755 (OG957_36765) - 8252687..8253832 (-) 1146 WP_371796833.1 ROK family protein -
  OG957_RS36760 (OG957_36770) - 8254568..8255611 (+) 1044 WP_371796834.1 ABC transporter permease -
  OG957_RS36765 (OG957_36775) - 8255608..8256525 (+) 918 WP_371796835.1 ABC transporter permease -
  OG957_RS36770 (OG957_36780) amiE 8256588..8257574 (+) 987 WP_371797369.1 ABC transporter ATP-binding protein Regulator
  OG957_RS36775 (OG957_36785) - 8257571..8258611 (+) 1041 WP_371796836.1 ABC transporter ATP-binding protein -
  OG957_RS36780 (OG957_36790) - 8258612..8260255 (+) 1644 WP_371796837.1 ABC transporter substrate-binding protein -
  OG957_RS36785 (OG957_36795) - 8260388..8261569 (+) 1182 WP_371796838.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36240.87 Da        Isoelectric Point: 8.2638

>NTDB_id=672095 OG957_RS36770 WP_371797369.1 8256588..8257574(+) (amiE) [Streptomyces sp. NBC_01718]
MLEVKDLTVEYITERGPVAACNELSFTLRRGEILGVAGESGSGKSTLITALTRLQRPPAVTTGGSILYHRRSQPTVDLAA
MTDKQLRHLRWRELAIVLQSAMAAWNPVMRLDAQFFDVIREHNRGMSRAAAADRTAQLLRMVGISPDRGRSYPHELSGGM
RQRALIALALACDPELVVMDEPTTAVDVVMQRQILAQILRLREELGFAVVYVTHDLSLLMELADRIAIMYAGRIVEIGAP
QDLYADPKHPYTQGLRDAFPPLRAPLTHLTGIPGSPPDLRNPPAGCAFHPRCGRRIDACDRTRPALQLLPTSGDRQVACH
LHDLESRS

Nucleotide


Download         Length: 987 bp        

>NTDB_id=672095 OG957_RS36770 WP_371797369.1 8256588..8257574(+) (amiE) [Streptomyces sp. NBC_01718]
TTGCTGGAAGTCAAGGACCTGACGGTCGAGTACATCACCGAGCGGGGGCCGGTGGCCGCCTGCAACGAGCTGTCGTTCAC
CCTGCGCCGCGGAGAAATCCTTGGCGTCGCCGGAGAGTCGGGCTCGGGCAAGAGCACCCTCATCACGGCACTGACCCGGC
TCCAACGGCCTCCAGCGGTCACCACCGGGGGGAGCATTCTCTATCACCGCAGGTCACAGCCTACTGTGGATCTGGCGGCG
ATGACGGACAAGCAACTACGTCATCTGCGGTGGAGGGAACTGGCCATCGTGCTGCAGAGCGCAATGGCGGCCTGGAACCC
CGTGATGCGCCTCGACGCGCAGTTCTTCGATGTCATCCGCGAGCACAACCGGGGGATGAGCCGTGCTGCCGCCGCCGACC
GGACGGCGCAGCTGCTGCGCATGGTCGGCATCTCGCCCGATCGTGGGCGTTCCTATCCCCATGAGCTCTCCGGCGGCATG
CGCCAGCGCGCCCTCATCGCCCTGGCACTGGCCTGCGACCCGGAACTGGTCGTCATGGACGAGCCCACGACAGCCGTCGA
CGTCGTCATGCAGCGCCAGATCCTGGCGCAGATCCTGCGTCTGCGCGAAGAGCTCGGATTCGCGGTCGTCTACGTCACCC
ATGATCTGTCGCTGCTCATGGAGCTCGCCGACCGTATCGCGATCATGTACGCCGGTCGGATCGTGGAGATCGGCGCACCG
CAGGATCTGTACGCCGACCCCAAGCACCCATACACGCAGGGGCTACGCGACGCATTCCCGCCTCTGCGCGCGCCGCTGAC
CCATCTGACCGGGATCCCGGGCAGCCCGCCTGACCTGCGCAATCCGCCTGCCGGATGTGCCTTTCACCCGCGTTGTGGAC
GCCGAATTGACGCGTGCGACCGAACTCGGCCTGCGCTGCAACTTCTGCCCACATCCGGCGACCGGCAGGTCGCCTGTCAT
CTGCACGACCTGGAGAGCCGGTCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.615

99.085

0.363