Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG894_RS28455 Genome accession   NZ_CP109169
Coordinates   6332632..6334557 (-) Length   641 a.a.
NCBI ID   WP_329451911.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01724     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6327632..6339557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG894_RS28440 (OG894_28475) - 6327958..6329217 (+) 1260 WP_313937177.1 FAD/NAD(P)-binding oxidoreductase -
  OG894_RS28445 (OG894_28480) dnaG 6329368..6331272 (+) 1905 WP_313937176.1 DNA primase -
  OG894_RS28450 (OG894_28485) - 6331497..6332615 (+) 1119 WP_313937175.1 RNA polymerase sigma factor -
  OG894_RS28455 (OG894_28490) rcrQ 6332632..6334557 (-) 1926 WP_329451911.1 ABC transporter ATP-binding protein Regulator
  OG894_RS28460 (OG894_28495) rcrP 6334557..6336290 (-) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OG894_RS28465 (OG894_28500) - 6336528..6337973 (-) 1446 WP_326744328.1 FGGY family carbohydrate kinase -
  OG894_RS28470 (OG894_28505) - 6338034..6338339 (-) 306 WP_313941539.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69145.54 Da        Isoelectric Point: 5.3060

>NTDB_id=671903 OG894_RS28455 WP_329451911.1 6332632..6334557(-) (rcrQ) [Streptomyces sp. NBC_01724]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRMPEGT
TKEQAVEGLRKTNSGLADLLSGVDFTPGHGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=671903 OG894_RS28455 WP_329451911.1 6332632..6334557(-) (rcrQ) [Streptomyces sp. NBC_01724]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTGTACGGGATGCTGGCGGCCTGTGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGATGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGTCTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCACGGCATCGACTTCGATGCGGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTACGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCTCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGCTGCGGGTCGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCGGACCCCGTGACGGGTGAGCGCCCGGCGGATCTGCTCGGCAGTGTCTCGCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACACTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCGCAGGGGGCTTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.199

93.916

0.378