Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KNN_RS09440 Genome accession   NZ_AP014864
Coordinates   1770892..1771671 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765892..1776671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS09420 (KNN_01944) trmFO 1766546..1767850 (+) 1305 WP_060851796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KNN_RS09425 (KNN_01945) xerC 1767916..1768815 (+) 900 WP_001101243.1 tyrosine recombinase XerC -
  KNN_RS09430 (KNN_01946) hslV 1768858..1769400 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  KNN_RS09435 (KNN_01947) hslU 1769423..1770814 (+) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  KNN_RS09440 (KNN_01948) codY 1770892..1771671 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KNN_RS09445 (KNN_01949) rpsB 1772019..1772720 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  KNN_RS09450 (KNN_01950) tsf 1772824..1773711 (+) 888 WP_001018578.1 translation elongation factor Ts -
  KNN_RS09455 (KNN_01951) pyrH 1773778..1774500 (+) 723 WP_000042668.1 UMP kinase -
  KNN_RS09460 (KNN_01952) frr 1774503..1775060 (+) 558 WP_000531501.1 ribosome recycling factor -
  KNN_RS09465 (KNN_01953) uppS 1775146..1775922 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=67180 KNN_RS09440 WP_000421290.1 1770892..1771671(+) (codY) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=67180 KNN_RS09440 WP_000421290.1 1770892..1771671(+) (codY) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment