Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA20_RS05825 Genome accession   NZ_CP094742
Coordinates   1130514..1132895 (+) Length   793 a.a.
NCBI ID   WP_262622065.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125514..1137895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA20_RS05800 (MUA20_05755) - 1126124..1126279 (+) 156 WP_165806095.1 hypothetical protein -
  MUA20_RS05805 (MUA20_05760) - 1126324..1127337 (-) 1014 WP_262622061.1 LLM class flavin-dependent oxidoreductase -
  MUA20_RS05810 (MUA20_05765) - 1127557..1128705 (+) 1149 WP_262622125.1 cysteine desulfurase family protein -
  MUA20_RS05815 (MUA20_05770) mnmA 1128702..1129814 (+) 1113 WP_262622062.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA20_RS05820 (MUA20_05775) - 1129837..1130511 (+) 675 WP_262622064.1 tetratricopeptide repeat protein -
  MUA20_RS05825 (MUA20_05780) recD2 1130514..1132895 (+) 2382 WP_262622065.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA20_RS05830 (MUA20_05785) alaS 1133121..1135751 (+) 2631 WP_262620362.1 alanine--tRNA ligase -
  MUA20_RS05835 (MUA20_05790) - 1135813..1136085 (+) 273 WP_262620363.1 IreB family regulatory phosphoprotein -
  MUA20_RS05840 (MUA20_05795) ruvX 1136078..1136506 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  MUA20_RS05845 (MUA20_05800) - 1136521..1136835 (+) 315 WP_037574148.1 DUF1292 domain-containing protein -
  MUA20_RS05850 (MUA20_05805) - 1137215..1137859 (+) 645 WP_394371013.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89654.93 Da        Isoelectric Point: 4.6523

>NTDB_id=671760 MUA20_RS05825 WP_262622065.1 1130514..1132895(+) (recD2) [Staphylococcus chromogenes strain IVB6199]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSDLFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGLGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEEVLTQLVEENRLVDDQENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQKNNVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYNFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=671760 MUA20_RS05825 WP_262622065.1 1130514..1132895(+) (recD2) [Staphylococcus chromogenes strain IVB6199]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGGAATATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACATTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGATCTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAAGCAATCGCAAATCGCAGACCAAGTATTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGCTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGAAACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATCGAAAC
AACTTTAATTGAAGAAGTATTGACTCAGCTTGTAGAAGAAAACCGTCTCGTTGATGATCAAGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTGCACCTCGAAGTTTTTGAT
CAATCAGATATTCAGATGCATATTGGTGAAATCGAGCAAAAAAATAATGTATCTTATGCTGAGGCACAAAAAGAGGCATT
AGAAGCTGCGATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACACGGGATTTCTTTAGATTACGATGACTATACCGAAGAAGATTATCCTATTGTTTTAGCA
GCACCGACGGGTCGGGCTTCGAAACGACTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTAATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCCGCCAAACTTATTATTATAGATGAAATGTCAATGG
TCGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCTGTTGGGCCTGGGCAAGTGTTTAAAGATTTAATTGCCTCGAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAGGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTACGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGCTATGATATGTCTGATATACAAGTATTAGCTCCGATGTACCGAGGAAATGCAGGGATTCATCGATTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGCGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGATAAGGTATTACAACTTGTCAATCGTCCGAATGACAATGTATTTAATGGCGACATCGGAGTTATTGTAGGTATTTTT
TGGGCTAAGGAAAATGCACTAAACAAAGACGTCGTTATCGTGGACTATGAAGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATAGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACAATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.985

99.369

0.487