Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA19_RS05760 Genome accession   NZ_CP094741
Coordinates   1197114..1199495 (+) Length   793 a.a.
NCBI ID   WP_262616254.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192114..1204495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS05735 (MUA19_05715) tnpA 1192304..1192731 (-) 428 Protein_1092 IS200/IS605 family transposase -
  MUA19_RS05740 (MUA19_05720) - 1192924..1193937 (-) 1014 WP_262616252.1 LLM class flavin-dependent oxidoreductase -
  MUA19_RS05745 (MUA19_05725) - 1194157..1195305 (+) 1149 WP_262617522.1 cysteine desulfurase family protein -
  MUA19_RS05750 (MUA19_05730) mnmA 1195302..1196414 (+) 1113 WP_232195460.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA19_RS05755 (MUA19_05735) - 1196437..1197111 (+) 675 WP_262616253.1 tetratricopeptide repeat protein -
  MUA19_RS05760 (MUA19_05740) recD2 1197114..1199495 (+) 2382 WP_262616254.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA19_RS05765 (MUA19_05745) alaS 1199721..1202351 (+) 2631 WP_262616255.1 alanine--tRNA ligase -
  MUA19_RS05770 (MUA19_05750) - 1202413..1202685 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  MUA19_RS05775 (MUA19_05755) ruvX 1202678..1203106 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  MUA19_RS05780 (MUA19_05760) - 1203121..1203435 (+) 315 WP_105985439.1 DUF1292 domain-containing protein -
  MUA19_RS05785 (MUA19_05765) - 1203814..1204458 (+) 645 WP_262616256.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89699.89 Da        Isoelectric Point: 4.6349

>NTDB_id=671728 MUA19_RS05760 WP_262616254.1 1197114..1199495(+) (recD2) [Staphylococcus chromogenes strain IVB6200]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGESYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSDLFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEDVLTQLVEEDRLVDDHENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQKNNVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYEDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGIF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLRTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=671728 MUA19_RS05760 WP_262616254.1 1197114..1199495(+) (recD2) [Staphylococcus chromogenes strain IVB6200]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGAAACATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCAAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAATCTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACTTTCCAAAAGGTGCTTCCGCAAACGAGAGAAGCGGTGATTCAATATTTATCAAGTGATCTTTTCAAAGGAGTCGGTAA
GAAAACTGCAGAATCTATTGTAGATACTTTAGGTGAAAATGCAATTCAGTCTATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAAGCAATCACAAATCGCTGATCAAGTATTTCAAAACCAAGAAAGCGAACAAATTATG
GTGCGACTGAATGAATTGGGATTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAGAGTGATACTTTAGACAT
CCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGATTTCAAAAAGCCGACCAATTAGCAAATCAAA
TGGGCATTTCAGAGCATCACCCCAATCGCTTAAAAGCAGGTATTCAGTTTGTCGTCGAAGAAACTTGTATTAAACAAGGG
CATACGTACTTGCCTAAAGAAACTTTAGTGACTGAGTCATTGCAACTACTTTCAAAAAATAGTCAGGTGCCTATCGAAAC
CACTTTAATTGAAGACGTGTTAACTCAACTTGTAGAGGAAGACCGTCTCGTTGATGATCACGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAGAATATTTATAAAATGATGCAACAACAACTGCATCTCGAAGTTTTTGAT
CAATCAGATATTCAAATGCATATTGGTGAAATCGAGCAAAAAAATAATGTATCATATGCTGAGGCCCAAAAAGAGGCGTT
AGAAGCCGCTATGAAGCATCAAATAATGATTCTAACAGGGGGACCTGGTACAGGTAAAACCACTGTAATTAAAGGAATCG
TTTATCTCTATGCTGCTTTACATGGAATTTCCCTAGATTACGAGGACTATACGGAAGAGGATTATCCTATTGTTTTAGCA
GCTCCGACAGGCCGTGCTTCGAAACGATTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTTATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATTTTGGATAATGAAATCTCTGCCAAACTTATTATCATAGATGAAATGTCAATGG
TGGATACTTGGTTGTTTCATCAATTTATGGCTGCTGTTCCTAATGATGCACAAGTTGTTTTGGTGGGTGATGAAGATCAA
CTCCCATCGGTTGGGCCTGGACAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAAGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTACGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGCTATGATATGTCTGATATACAAGTATTAGCTCCGATGTACCGAGGAAATGCAGGGATTCATCGATTGAATAA
AGTGCTTCAAGAAATACTCAACCCTTTGGATACATCTGAGCAACGTGAAATTCAGTTTGGTGATGTGTTGTTTCGAAAAG
GTGATAAGGTACTACAACTTGTTAATCGCCCGAATGACAATGTATTTAATGGCGATATCGGAGTAATTGTAGGTATTTTT
TGGGCCAAAGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGATTATGAAGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACTGAGTTGACACATGCCTATTGTACATCAATTCATAAAGCTCAAGGTTCAGAATTTCCGATAGTCATTATGCCTA
TTGTCAAACAATACTATAGAATGTTGCAAAAGCCCATTTTATATACGGGGCTTACACGTGCGAAGCAATCATTAGTTTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAGAACAGAAGGCCAAGTAAGATTAACACGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACCGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACACCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.112

99.369

0.488