Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OIE76_RS08485 Genome accession   NZ_CP109163
Coordinates   1871988..1873361 (-) Length   457 a.a.
NCBI ID   WP_327123873.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866988..1878361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE76_RS08460 (OIE76_08480) - 1867234..1867602 (-) 369 WP_327123870.1 DUF6167 family protein -
  OIE76_RS08465 (OIE76_08485) - 1867610..1868059 (-) 450 WP_327128994.1 DUF948 domain-containing protein -
  OIE76_RS08470 (OIE76_08490) - 1868222..1870435 (+) 2214 WP_327123871.1 NB-ARC domain-containing protein -
  OIE76_RS08475 (OIE76_08495) rpsD 1870453..1871067 (-) 615 WP_030918857.1 30S ribosomal protein S4 -
  OIE76_RS08480 (OIE76_08500) - 1871256..1871957 (+) 702 WP_327123872.1 DUF2470 domain-containing protein -
  OIE76_RS08485 (OIE76_08505) rarA 1871988..1873361 (-) 1374 WP_327123873.1 replication-associated recombination protein A Machinery gene
  OIE76_RS08490 (OIE76_08510) - 1873428..1874063 (-) 636 WP_327123874.1 vitamin K epoxide reductase family protein -
  OIE76_RS08495 (OIE76_08515) hisS 1874457..1875719 (-) 1263 WP_327123875.1 histidine--tRNA ligase -
  OIE76_RS08500 (OIE76_08520) - 1875734..1876420 (-) 687 WP_327123876.1 MBL fold metallo-hydrolase -
  OIE76_RS08505 (OIE76_08525) - 1876580..1877371 (+) 792 WP_327123877.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48498.89 Da        Isoelectric Point: 6.2962

>NTDB_id=671701 OIE76_RS08485 WP_327123873.1 1871988..1873361(-) (rarA) [Streptomyces sp. NBC_01727]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRSLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRTVIESARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRALMRRALTAEHGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAALAMQEKE
VTLQTVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRNGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVADKRYYRPTRYGAEARYADVVDRVRDRLGRGGSDDATDA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=671701 OIE76_RS08485 WP_327123873.1 1871988..1873361(-) (rarA) [Streptomyces sp. NBC_01727]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCTCGTAGCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGCCTCGTCGGCG
AAGGCGGCGGCGGCCCCGCCGGCCCGTCGTCGGTGATCCTCTGGGGCCCGCCCGGCATCGGCAAGACGACTCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGGGTCAAGGAAGTGCGGACCGTCAT
CGAGAGCGCCCGCCGTGCCACCGGTGGCTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCGCTGCTGCCGGCGGTGGAGAACCGCTGGGTGACACTCATCGCCGCGACGACCGAGAACCCGTACTTC
TCGATCATCTCGCCGCTCCTGTCGCGCTCGCTGCTCCTGACCCTCGAGTCGCTCACCGACGACGATCTGCGCGCCCTGAT
GCGGCGCGCCCTGACCGCCGAGCACGGCCTCGGTGGCGCGGTCACACTGCCCGAGGACGCCGAGGCCCATCTGCTGCGCA
TCGCGGGCGGTGACGCGCGCCGCGCGCTGACGGCACTGGAGGCCGCGGCCGGTGCGGCCCTCGCCATGCAGGAGAAGGAG
GTCACCCTCCAGACGGTCGAGGCGACCGTCGACCGGGCGGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCGCTGATCAAGTCGATCCGTGGCTCCGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGGCGGTTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGACGGCGCTG
CCCACAGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCATGCCACGAT
CGCGCTGGCGCTCGCCCCCAAGTCCAACGCCGCGACGCTGGCGATCTCCGCCGCCCAGGAGGATGTGCGCAACGGCCTGG
CGGGCCCGGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGGGCCGCCAAACTGGGTCATGCTCAGGGCTACGTCTAT
CCGCACGACGTCCCCGGCGGGATCGCAGCCCAGCAGTACGCCCCGGACGCGGTCGCCGACAAGCGCTACTACCGGCCCAC
CCGGTACGGCGCCGAGGCGCGCTATGCGGATGTGGTGGACCGGGTCCGCGACCGGCTGGGCCGCGGTGGTTCCGACGACG
CGACGGACGCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

94.53

0.416