Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA44_RS06225 Genome accession   NZ_CP094740
Coordinates   1307125..1309524 (+) Length   799 a.a.
NCBI ID   WP_262613607.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1302125..1314524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA44_RS06195 (MUA44_06185) - 1302310..1302495 (+) 186 WP_096545141.1 CsbD family protein -
  MUA44_RS06200 (MUA44_06190) - 1302532..1302693 (+) 162 WP_019165159.1 hypothetical protein -
  MUA44_RS06205 (MUA44_06195) - 1302948..1303961 (-) 1014 WP_262613606.1 LLM class flavin-dependent oxidoreductase -
  MUA44_RS06210 (MUA44_06200) - 1304175..1305320 (+) 1146 WP_262613639.1 cysteine desulfurase family protein -
  MUA44_RS06215 (MUA44_06205) mnmA 1305353..1306432 (+) 1080 WP_394356358.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA44_RS06220 (MUA44_06210) - 1306448..1307122 (+) 675 WP_019165163.1 tetratricopeptide repeat protein -
  MUA44_RS06225 (MUA44_06215) recD2 1307125..1309524 (+) 2400 WP_262613607.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA44_RS06230 (MUA44_06220) alaS 1309770..1312403 (+) 2634 WP_262613608.1 alanine--tRNA ligase -
  MUA44_RS06235 (MUA44_06225) - 1312463..1312735 (+) 273 WP_014613743.1 IreB family regulatory phosphoprotein -
  MUA44_RS06240 (MUA44_06230) ruvX 1312728..1313156 (+) 429 WP_019165166.1 Holliday junction resolvase RuvX -
  MUA44_RS06245 (MUA44_06235) - 1313170..1313508 (+) 339 WP_262615988.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90226.57 Da        Isoelectric Point: 4.6146

>NTDB_id=671695 MUA44_RS06225 WP_262613607.1 1307125..1309524(+) (recD2) [Staphylococcus delphini strain IVB6190]
MENPTLFDHTFIKGTVEMILFHNADNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIERVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLTQYFNPEDSEDKADTDTDSAALILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=671695 MUA44_RS06225 WP_262613607.1 1307125..1309524(+) (recD2) [Staphylococcus delphini strain IVB6190]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAAATGATTTTGTTTCATAATGCGGACAACCA
TTACACAGTACTTAAAGTGGAAATAGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTAGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGCCAGCAATTAAAAGCGGAG
ACGTTTCAAAAAGAAATTCCTCATACTAAAGATGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATACGTTAGGTGAAAATGCGATTCATGACATTTTGAAAGACGAATCTGTTATCGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTCGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGTTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTCAATAAAGCTGACCAACTGGCCCAACAGC
TCGGTATTCATCCAGAGCATCCCGATCGTTTAAAAGCCGGATTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCTAAAGCATCAAGTATCGACTA
TGACACCATGACGCAAATTTTGGCTGAATTAGTTGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTGCATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCTATCCAACATAAAGTGATGCTCCTCACGGGTGGACCAGGTACAGGGAAGACTACTGTCATTAAAGGGATTG
TCCAGTTATACGCAGAAATTCATGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTTTTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAATCAAGATACGAAACCACAAGACAAGTTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAGATGTCTA
TGGTGGACACTTGGCTATTCCATCAATTTATGGATGCAGTGCCTATTGATGCACAAGTTGTATTAGTTGGTGATGAAGAT
CAGCTCCCATCAGTTGGCCCCGGACAAGTTTTTAAAGATCTCATTGATGCGAATGTATTACCGCGCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGTTCCAGTATTATTGATCTAGCGCATCGCATGAAACTCGGTGAAAAAGTCGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACTGATCAAATTCCACAAGTTGTTGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGACATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTCAA
CCAAATTTTACAAGGCATTTTGAATCCATTGTCAGATGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTTGTCGATTATGACGGGAACGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCCTATTGTACTTCGATTCATAAAGCACAAGGTTCAGAGTTTCCGATCGTTATTATGC
CCATTGTTAAGCAGTATTTTAGAATGTTACAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTAGGTGATGCGGATGCTTTTAATATCGGGTTAGCGACTGCAGGTCAAACGCGGTTAACGCAACTACAAACGTTCTT
AACGCAATATTTTAATCCGGAAGATAGTGAGGATAAAGCAGATACTGATACGGATTCTGCTGCGTTAATTTTGACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.812

99.75

0.497