Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA34_RS06695 Genome accession   NZ_CP094738
Coordinates   1356025..1358424 (+) Length   799 a.a.
NCBI ID   WP_262609596.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351025..1363424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA34_RS06665 (MUA34_06650) - 1351197..1351382 (+) 186 WP_096541591.1 CsbD family protein -
  MUA34_RS06670 (MUA34_06655) - 1351419..1351580 (+) 162 WP_164715577.1 hypothetical protein -
  MUA34_RS06675 (MUA34_06660) - 1351848..1352861 (-) 1014 WP_155259722.1 LLM class flavin-dependent oxidoreductase -
  MUA34_RS06680 (MUA34_06665) - 1353075..1354220 (+) 1146 WP_196232006.1 cysteine desulfurase family protein -
  MUA34_RS06685 (MUA34_06670) mnmA 1354253..1355332 (+) 1080 WP_155259758.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA34_RS06690 (MUA34_06675) - 1355348..1356022 (+) 675 WP_096541587.1 tetratricopeptide repeat protein -
  MUA34_RS06695 (MUA34_06680) recD2 1356025..1358424 (+) 2400 WP_262609596.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA34_RS06700 (MUA34_06685) alaS 1358670..1361303 (+) 2634 WP_262609597.1 alanine--tRNA ligase -
  MUA34_RS06705 (MUA34_06690) - 1361363..1361635 (+) 273 WP_096597089.1 IreB family regulatory phosphoprotein -
  MUA34_RS06710 (MUA34_06695) ruvX 1361628..1362056 (+) 429 WP_096541581.1 Holliday junction resolvase RuvX -
  MUA34_RS06715 (MUA34_06700) - 1362070..1362402 (+) 333 WP_262609598.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90373.74 Da        Isoelectric Point: 4.5792

>NTDB_id=671632 MUA34_RS06695 WP_262609596.1 1356025..1358424(+) (recD2) [Staphylococcus delphini strain IVB6220]
MENPTLFDHTFIKGTVEMILFHNADNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNKLGENAIHDILKDESVIERVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIRHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDVVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPLINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQDILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSVHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLTQYFNPEDSEDEVDTDTDSAAFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=671632 MUA34_RS06695 WP_262609596.1 1356025..1358424(+) (recD2) [Staphylococcus delphini strain IVB6220]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAAATGATTTTGTTTCATAATGCGGACAACCA
TTATACAGTGCTTAAAGTGGAAATTGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTAGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATAAGTTAGGTGAAAATGCGATTCATGACATTTTGAAAGACGAATCTGTCATTGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTGGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGCTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAATAAAGCTGACCAACTGGCCCAACAGC
TCGGTATTCATCCTGAGCATCCCGATCGTTTGAAAGCCGGATTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCCAAAGCATCAAGTATCGACTA
TGACACCATGACGCAAATTTTGGCTGAATTAGTTGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCTGATATCCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTGCATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCTATCCGACATAAAGTTATGCTCCTCACGGGTGGACCAGGTACAGGAAAGACAACTGTCATTAAAGGGATTG
TCCAGTTATACGCAGAAATTCATGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAATCAAGATACGAAACCACAAGACAAGTTAGACAATGAAATTCATGCGAAATTAATTATTATTGATGAGATGTCTA
TGGTGGACACTTGGCTATTCCATCAATTTATGGATGTAGTGCCTATCGATGCACAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTCCCATCAGTTGGGCCCGGACAAGTTTTTAAAGATCTCATTGACGCGAATGTATTACCGCTCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGCATGAAACTCGGTGAAAAAGTCGACATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTTGTAGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGATATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTTAA
CCAAATTTTACAAGACATTTTGAATCCATTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTCGATTATGATGGGAATGAGATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCCTATTGTACTTCGGTTCATAAAGCACAAGGTTCAGAGTTTCCGATCGTTATTATGC
CCATTGTTAAGCAATATTTTAGAATGTTGCAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTAGGTGATGCGGATGCTTTTAATATCGGATTAGCGACTGCAGGTCAAACGCGGTTAACGCAATTACAAACGTTCTT
AACGCAATATTTTAATCCGGAAGATAGTGAGGATGAAGTAGATACTGATACGGATTCTGCTGCGTTTATTTTAACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.812

99.75

0.497