Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA38_RS13135 Genome accession   NZ_CP109157
Coordinates   2935947..2937680 (+) Length   577 a.a.
NCBI ID   WP_363278409.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01732     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930947..2942680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA38_RS13105 (OHA38_13110) - 2932748..2932954 (-) 207 WP_266789889.1 hypothetical protein -
  OHA38_RS13125 (OHA38_13130) - 2933964..2934263 (+) 300 WP_124717825.1 YtxH domain-containing protein -
  OHA38_RS13130 (OHA38_13135) - 2934333..2935778 (+) 1446 WP_266789891.1 FGGY family carbohydrate kinase -
  OHA38_RS13135 (OHA38_13140) rcrP 2935947..2937680 (+) 1734 WP_363278409.1 ABC transporter ATP-binding protein Regulator
  OHA38_RS13140 (OHA38_13145) - 2937680..2939617 (+) 1938 WP_363278410.1 ABC transporter ATP-binding protein -
  OHA38_RS13145 (OHA38_13150) - 2939680..2940783 (-) 1104 WP_124717821.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62677.83 Da        Isoelectric Point: 5.3993

>NTDB_id=671632 OHA38_RS13135 WP_363278409.1 2935947..2937680(+) (rcrP) [Streptomyces sp. NBC_01732]
MLIKLLRAYLGPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVRGDTGYILEFGGIMIAVSIAQVVCNMGAVHIGA
RTASALGRDVRASIFDQVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNRVLREQITGNRVIRAFVRDGYEEERFRSSNTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVIWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVRKLLARGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWQALEVAQAKEFVTALEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671632 OHA38_RS13135 WP_363278409.1 2935947..2937680(+) (rcrP) [Streptomyces sp. NBC_01732]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAGAAAACCCATCCTGCTGCTGGTCCTTCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCCGGGGGGACACGGGCTACA
TCCTCGAATTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTCCACATCGGCGCC
CGTACCGCGTCCGCTCTCGGCCGCGATGTCCGGGCGTCGATCTTCGACCAGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CACTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGGTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
GCTACGAGGAGGAGCGGTTCCGCAGCTCCAACACCGAGCTGACGGACGTGGCACTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCCACCGTGATGACGGTCGTGAACGTCTCCTCGATCGCGGTGATCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGGGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCCGTCAAGCCGGTCCGCAAGCTGCTCGCCCGCGGTCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGTCTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGATGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCCAGGACCGTGGGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
CAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCAGGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACGGCGCTGGAGCACGGTCTGGACGCGCCGATCTCGCAGGGCGGCACCAATGTGTCGGGCGGGCAGCGGCAGCGTCTG
GCCATCGCCAGGACGCTGGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCGCTCTCCCGGGAGACGGCGGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.794

100

0.402