Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG909_RS09585 Genome accession   NZ_CP109132
Coordinates   2371760..2373991 (-) Length   743 a.a.
NCBI ID   WP_326697563.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2366760..2378991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS09575 (OG909_09570) - 2367311..2369686 (+) 2376 WP_326697561.1 heavy metal translocating P-type ATPase -
  OG909_RS09580 (OG909_09575) - 2370264..2371562 (-) 1299 WP_326697562.1 citrate synthase -
  OG909_RS09585 (OG909_09580) recD/recD2/recDB 2371760..2373991 (-) 2232 WP_326697563.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG909_RS09590 (OG909_09585) - 2374047..2374580 (-) 534 WP_326697564.1 XRE family transcriptional regulator -
  OG909_RS09595 (OG909_09590) - 2374777..2376234 (+) 1458 WP_326697565.1 Na+/H+ antiporter NhaC family protein -
  OG909_RS09600 (OG909_09595) - 2376278..2377216 (+) 939 WP_326697566.1 dihydrodipicolinate synthase family protein -
  OG909_RS09605 (OG909_09600) - 2377209..2378411 (+) 1203 WP_326697567.1 FAD-binding oxidoreductase -
  OG909_RS09610 (OG909_09605) - 2378408..2378698 (+) 291 WP_326697568.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80013.64 Da        Isoelectric Point: 6.7010

>NTDB_id=671406 OG909_RS09585 WP_326697563.1 2371760..2373991(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01754]
MSNTAVLEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWASHPQFGKQFQVDNYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAVAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYADASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEGGELVTAVYLVPFHRAELSLAAQVQRLLRTPEDRMPAFRDVD
WDAALAWLARRTGVKLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHILLVGDVDQLPSVGAGEVLRDLLAE
DGPVPSVRLTTIFRQAQQSGVVTNAHRINAGVPPLTEGLNDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTALDPDEQSLTVLT
DEDEEIAYDFDELDELSHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTGLAFRLRGGAAGDFAEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=671406 OG909_RS09585 WP_326697563.1 2371760..2373991(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01754]
ATGTCCAACACGGCAGTGCTCGAAGGCGTCCTGGAACGGATCACCTACGCCAACGAGGAGAACGGGTACACCGTCGCCCG
CGTCGACACCGGGCGGGGGAGCGGTGACCTGCTCACCGTCGTGGGTTCGCTGCTGGGGGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGCCTCGCACCCGCAGTTCGGCAAGCAGTTCCAGGTGGACAACTACACGACGGTCCTCCCGGCC
ACGATCCAGGGCATCCGCCGCTATCTCGGTTCCGGACTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGCATCACCAC
CCACTTCGGCGTGGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTGGTCGAGGTGCCGGGGCTGGGTCCGAAGC
GGACGAAGATGATCGCCGTGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCGACCTCCATCGCCGTCCGCATCTACAAGAAGTACGCCGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCGGACGTCTGGGGCATCGGTTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGCCTCCAGTACGCACTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTCCCCGAGGAACGGCTC
ATCGCGGACGGGGTCAAGCTCCTCCAGGTGGACACGGGGCTGGTGATCGACTGCCTGGCCGAGCTCGCCGAGGACCCGGA
GGGCGTCGTGCGGGAGAAGGTGCCGGGCCCGGAGGGCGGGGAGCTGGTCACCGCCGTCTATCTGGTGCCCTTCCACCGTG
CCGAGCTGTCGCTCGCCGCCCAGGTGCAGCGGCTGCTGCGTACGCCGGAGGACCGGATGCCGGCCTTCCGGGACGTGGAC
TGGGACGCGGCACTGGCCTGGCTGGCCCGGCGTACGGGGGTGAAGCTGGCGCCCGAGCAGGAGGCCGCCGTGCGGCTCGC
GCTCAGCCGGAAGGTCGCCGTCCTGACCGGCGGGCCGGGCTGCGGCAAGTCGTTCACCGTCCGGTCCGTCGTCGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTACTGGCCGCGCCCACCGGCCGGGCGGCGAAGCGGCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGTGACGCCGCGTACGACCGGGAGCGGCCGCTGGACGC
CGATCTGGTGGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGGCACCCGGTG
CCCACATCCTCCTGGTCGGGGACGTGGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTGCTGCGCGATCTGCTCGCCGAG
GACGGGCCGGTGCCGTCCGTGCGGCTGACCACGATCTTCCGGCAGGCCCAGCAGTCGGGGGTGGTCACCAACGCCCACCG
CATCAACGCCGGCGTCCCGCCGCTCACCGAGGGGCTGAACGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCGG
GGGTGCTCGCGGTGGACGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTGAACCCCCGCCGTGACGTGCAGGTACTC
GCCCCGATGCACCGGGGACCGGCGGGCGCGGGCCATCTCAACGGCCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGG
CCTCGCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGGAACAACTACGAGAAGG
GCGAGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCGCCCTCGACCCGGACGAGCAGTCGCTGACGGTCCTCACG
GACGAGGACGAGGAGATCGCGTACGACTTCGACGAGCTCGACGAGCTGTCCCACGCCTACGCCATGACGATCCACCGTTC
CCAGGGCAGCGAATACCCGGCGGTCGTCGTCCCCGTCACCACCAGCGCCTGGATGATGCTCCAGCGGAACCTGCTGTACA
CGGCGGTGACCAGGGCCAAGAAGCTCGTCGTCCTGGTCGGCTCACGCAAGGCCATCGGGCAGGCGGTCCGCACGGTTTCC
GCCGGGAGACGCTGTACGGGACTGGCTTTCCGGCTGCGCGGAGGCGCCGCAGGAGACTTCGCGGAGAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

AAA domain (AAA_30)

(336-514)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.125

100

0.361