Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA17_RS06130 Genome accession   NZ_CP094725
Coordinates   1289544..1291940 (+) Length   798 a.a.
NCBI ID   WP_262632011.1    Uniprot ID   -
Organism   Staphylococcus felis strain IVB6254     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284544..1296940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA17_RS06100 (MUA17_06105) - 1284728..1284928 (+) 201 WP_103209995.1 CsbD family protein -
  MUA17_RS06105 (MUA17_06110) - 1284928..1285083 (+) 156 WP_167388997.1 hypothetical protein -
  MUA17_RS06110 (MUA17_06115) - 1285260..1286222 (-) 963 WP_232618955.1 LLM class flavin-dependent oxidoreductase -
  MUA17_RS06115 (MUA17_06120) - 1286558..1287703 (+) 1146 WP_115891155.1 cysteine desulfurase family protein -
  MUA17_RS06120 (MUA17_06125) mnmA 1287700..1288812 (+) 1113 WP_115856095.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA17_RS06125 (MUA17_06130) - 1288865..1289539 (+) 675 WP_103209989.1 tetratricopeptide repeat protein -
  MUA17_RS06130 (MUA17_06135) recD2 1289544..1291940 (+) 2397 WP_262632011.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA17_RS06135 (MUA17_06140) alaS 1292187..1294817 (+) 2631 WP_115925780.1 alanine--tRNA ligase -
  MUA17_RS06140 (MUA17_06145) - 1294990..1295262 (+) 273 WP_103209984.1 IreB family regulatory phosphoprotein -
  MUA17_RS06145 (MUA17_06150) ruvX 1295255..1295683 (+) 429 WP_262632014.1 Holliday junction resolvase RuvX -
  MUA17_RS06150 (MUA17_06155) - 1295697..1296011 (+) 315 WP_103209980.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90412.06 Da        Isoelectric Point: 4.6427

>NTDB_id=671362 MUA17_RS06130 WP_262632011.1 1289544..1291940(+) (recD2) [Staphylococcus felis strain IVB6254]
MENPTLLDSTYIKGNIEFILFQNSENFYTVLKVEVLESNGDFGDMATVVGFFPNIVEDETYIFHGHIVLHPRYGQQLKAE
TFQKEIPQTKDAVIAYLSSDLFKGIGKKTAESIVNTIGEDAITQILRDESVLSDVPKLSKAKQQQIAELITQNRESEQIM
IRLNELGFGAKLSMDIYQYYKADTIRIVENNPYQLVFDIRGVGFQKADQLALQLGIAPTNQDRLKAGLLYLIEEICIKQG
HTYLPESTLINEAVQLLSKNQNITIETTQIKETLTFLYEEKKLINFEENVSLPSLYYSELKSTQNLFKIMSNVEMISKFD
DSDIQLQIGQIEEQNHVYYAPSQKDALENAMKHKVMLLTGGPGTGKTTVIKGIVQLYAELHGLSLDYNDYEEGEFPISLA
APTGRASKRLYESTGLEATTIHRLIGWSQETKPDDILDYEISAKLIIIDEMSMVDTWLFHQFLSAVPLDAQVILVGDEDQ
LPSVGPGQVFKDLIDTGVLPRINLTEVFRQQDGSSIIELAHRMKTGLNVDITERYHDRSFIPCHAEQIPSVVDKVVKNAV
KKGYTMSDIQVLAPMYRGSAGIKKLNEVLQNILNPKHDDEHREIDFGEVKFRKGDKVLQLVNRPNDNIFNGDIGEIVGIF
WAKENDLNKDVVVVDFEGNEITFIRSDLIELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGEAEAFNIGLTTEGQTRLTYLATFLRQYFNDTDDIRESETSNDHQSIVLTEDTISKIDPMINMAKITPYDFLEIDKV

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=671362 MUA17_RS06130 WP_262632011.1 1289544..1291940(+) (recD2) [Staphylococcus felis strain IVB6254]
GTGGAAAACCCAACATTATTAGATAGCACATATATCAAAGGGAATATCGAATTTATTTTATTTCAAAATAGCGAAAACTT
TTACACTGTTTTAAAAGTGGAAGTTCTTGAGTCAAATGGCGATTTCGGTGATATGGCTACGGTTGTTGGGTTTTTTCCAA
ACATCGTGGAAGACGAAACGTATATATTTCATGGTCATATCGTATTACATCCTCGATACGGCCAACAACTTAAAGCTGAG
ACATTTCAAAAGGAAATCCCTCAAACAAAAGATGCTGTTATTGCTTATTTATCGAGCGATTTATTCAAAGGGATAGGTAA
AAAAACAGCAGAATCAATCGTAAATACAATTGGTGAAGACGCTATTACCCAAATATTAAGAGATGAATCTGTTCTATCGG
ATGTTCCTAAATTATCTAAAGCAAAGCAACAACAAATTGCTGAACTGATTACCCAAAATCGGGAAAGCGAACAAATAATG
ATTCGCCTAAATGAACTAGGCTTCGGTGCAAAGTTATCAATGGATATTTATCAATATTATAAAGCTGACACCATCCGAAT
CGTTGAAAATAATCCGTATCAATTGGTTTTTGATATCCGAGGTGTAGGGTTTCAAAAAGCTGATCAACTTGCATTACAAC
TTGGTATAGCACCAACGAATCAAGATCGTTTGAAAGCTGGATTGCTTTATTTAATTGAAGAAATATGTATTAAACAAGGT
CATACATATCTACCTGAATCAACTCTTATCAATGAAGCGGTACAGTTATTGTCCAAAAATCAAAATATAACGATTGAAAC
AACACAAATTAAAGAAACTTTGACATTCTTATACGAAGAAAAAAAGTTAATCAACTTTGAAGAAAATGTGTCGTTACCGA
GCCTCTATTATTCTGAACTAAAAAGTACTCAAAACTTATTTAAAATTATGAGCAATGTTGAAATGATTTCAAAATTTGAC
GATTCGGACATTCAATTACAAATTGGTCAAATCGAGGAACAAAATCATGTATACTATGCCCCTTCTCAAAAAGATGCATT
AGAAAATGCAATGAAACACAAAGTCATGTTATTAACAGGTGGGCCAGGAACAGGAAAGACTACTGTAATTAAAGGGATTG
TTCAATTATATGCAGAATTACACGGTTTATCTTTAGATTATAATGATTATGAAGAGGGTGAGTTTCCGATTTCACTTGCT
GCACCGACTGGCCGTGCCTCTAAACGACTTTATGAATCTACAGGTCTTGAAGCAACTACCATTCACCGCCTTATTGGTTG
GAGTCAAGAAACAAAGCCAGACGATATTTTAGATTATGAAATCAGTGCAAAACTTATTATTATTGATGAGATGTCAATGG
TAGATACATGGTTGTTTCATCAATTTTTATCAGCTGTGCCATTAGATGCTCAAGTGATACTTGTAGGTGATGAAGATCAA
CTCCCATCAGTTGGTCCTGGTCAAGTGTTTAAAGATTTAATTGATACAGGTGTACTACCTAGAATTAACTTAACTGAAGT
CTTCAGACAACAAGATGGTTCGAGCATTATTGAATTAGCACATCGTATGAAAACAGGACTTAACGTTGACATTACTGAAA
GATATCATGATCGCTCGTTTATTCCATGTCATGCTGAACAAATTCCTAGTGTTGTTGATAAAGTTGTAAAAAATGCTGTC
AAAAAAGGATATACGATGTCAGATATTCAGGTGTTAGCTCCGATGTACCGTGGTAGTGCTGGGATTAAAAAATTAAATGA
AGTTTTACAAAATATATTAAACCCAAAACACGATGATGAACATCGTGAAATTGATTTTGGTGAAGTAAAGTTTCGTAAAG
GGGACAAAGTGTTACAACTTGTCAACAGGCCAAACGACAATATATTCAATGGAGATATTGGAGAGATTGTTGGTATTTTT
TGGGCAAAAGAAAATGATTTGAATAAAGATGTAGTCGTAGTAGATTTTGAAGGAAATGAAATTACATTCATACGATCAGA
TTTAATTGAACTGACACATGCTTATTGCACATCAATTCATAAAGCACAAGGATCAGAATTTCCAATTGTGATTATGCCTA
TAGTTAAGCAGTATTTTCGAATGTTACAAAAACCCATACTTTACACTGGTCTTACACGCGCAAAGCAATCGCTTGTCTTT
TTAGGTGAAGCGGAGGCGTTTAACATAGGATTAACGACAGAAGGACAAACAAGGTTAACGTACTTGGCAACGTTTTTACG
ACAGTATTTTAACGATACGGATGATATACGTGAATCCGAAACATCAAATGATCATCAATCTATTGTTTTAACAGAAGACA
CTATTTCTAAGATTGATCCTATGATTAATATGGCAAAGATAACACCATATGATTTTTTAGAAATTGACAAAGTTTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.686

99.624

0.495