Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA51_RS05960 Genome accession   NZ_CP094723
Coordinates   1223188..1225584 (-) Length   798 a.a.
NCBI ID   WP_262558781.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218188..1230584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA51_RS05940 (MUA51_05935) - 1219212..1219532 (-) 321 WP_262558772.1 DUF1292 domain-containing protein -
  MUA51_RS05945 (MUA51_05940) ruvX 1219546..1219974 (-) 429 WP_262558774.1 Holliday junction resolvase RuvX -
  MUA51_RS05950 (MUA51_05945) - 1219967..1220242 (-) 276 WP_262558776.1 IreB family regulatory phosphoprotein -
  MUA51_RS05955 (MUA51_05950) alaS 1220308..1222938 (-) 2631 WP_262558778.1 alanine--tRNA ligase -
  MUA51_RS05960 (MUA51_05955) recD2 1223188..1225584 (-) 2397 WP_262558781.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA51_RS05965 (MUA51_05960) - 1225587..1226258 (-) 672 WP_262558783.1 tetratricopeptide repeat protein -
  MUA51_RS05970 (MUA51_05965) mnmA 1226384..1227496 (-) 1113 WP_262558784.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA51_RS05975 (MUA51_05970) - 1227508..1228641 (-) 1134 WP_262558786.1 cysteine desulfurase family protein -
  MUA51_RS05980 (MUA51_05975) - 1228848..1229861 (+) 1014 WP_262558789.1 LLM class flavin-dependent oxidoreductase -
  MUA51_RS05985 (MUA51_05980) - 1229966..1230157 (-) 192 WP_262558791.1 CsbD family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90009.11 Da        Isoelectric Point: 4.4247

>NTDB_id=671299 MUA51_RS05960 WP_262558781.1 1223188..1225584(-) (recD2) [Staphylococcus sp. IVB6214]
MENPTLLDSTYVKGEVVLILFQNTDNFYTVLKVEVDDTNGDFEDEVTVVGYFPDIVEDETYLFKGYVVQHARYGQQLKAE
TFQKELPQTKDAVISYLSSSLFKGIGVKTAESIVETLGEDAIHQILNDASCLSRVPRLSKDKQEQIAQQVYQNQESEQIM
IRLNELGFGSKLAMDIYKFYQADTLKVLDNNPYQLVYDIKGVGFQKADQLAQQLGIHPMHQDRLRAGILYVVEETCLKNG
HTYLPADALIHAAIELLSKNQPETIEEPPMHDCMTQLVEEQKLIAVDDIVAIPSLYYSELKSTQNLFKVANHKQALTQFD
LSDIQLHIGEIEEMNEVSYAASQKDALECALQNKVMLLTGGPGTGKTTVIKGIVQLYAEMHGLSLDYDDYDEGEAFPVVL
AAPTGRASKRLHESTGLEAMTIHRLIGWNQETKPDDLLEHEIDARLIIIDEMSMVDTWLFHQFMNAVPLDAQIVLVGDED
QLPSVGPGQVFKDLIDADVLPRINLTEVYRQQDGSSIIDLAHRIKLGQDVDITKRYHDRSFIACQTHQIPEIVDKIVSNA
VGKGYTMSDIQVLAPMYRGSAGIQKLNQVLQNILNPKEGDDHREVAFGDVLFRKGDKVLQLVNRPDDNVFNGDIGEIIGI
FWAKENALNKDVVIVDYEGNEITYMRSDLTELTHAYCTSIHKSQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLV
FLGDADAFNMGLQTEGQTRLTQLQTFLTMYFKGDTEDSETNDAVETTFVLTESNMYQVNPMINMGETTPYDFLEIDKR

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=671299 MUA51_RS05960 WP_262558781.1 1223188..1225584(-) (recD2) [Staphylococcus sp. IVB6214]
GTGGAAAACCCAACGCTACTAGATAGTACTTATGTAAAAGGTGAAGTGGTTCTTATCCTTTTTCAAAATACGGACAATTT
TTATACAGTATTAAAAGTTGAAGTTGATGATACGAATGGCGATTTTGAAGATGAAGTGACAGTCGTTGGGTATTTTCCAG
ATATCGTTGAAGATGAAACGTATCTTTTTAAGGGTTATGTTGTACAGCACGCACGATATGGGCAACAGTTAAAAGCTGAA
ACATTTCAAAAAGAACTCCCTCAAACGAAAGATGCGGTGATATCGTATCTCTCTAGTTCACTATTTAAAGGGATTGGTGT
CAAAACAGCAGAATCAATTGTTGAAACACTTGGAGAAGATGCCATTCATCAAATATTAAATGATGCATCATGCTTGTCTC
GTGTACCGCGCCTGTCAAAAGATAAACAAGAACAAATTGCCCAACAAGTATACCAAAATCAAGAAAGCGAACAAATTATG
ATTCGTTTGAACGAACTCGGTTTTGGTTCAAAACTTGCAATGGATATATATAAGTTTTATCAGGCAGATACATTAAAAGT
TCTTGATAATAATCCATATCAACTTGTTTATGATATTAAAGGAGTTGGTTTTCAAAAGGCGGACCAATTGGCACAGCAAC
TAGGAATTCATCCGATGCATCAAGACCGCTTGCGTGCAGGGATTCTCTATGTTGTGGAAGAGACATGCCTTAAAAATGGA
CACACTTATTTACCAGCTGATGCATTAATTCATGCAGCAATTGAATTGCTCTCGAAAAACCAGCCTGAAACAATAGAAGA
GCCACCTATGCATGATTGTATGACGCAACTTGTTGAAGAACAGAAACTAATCGCAGTTGATGACATTGTGGCAATTCCAA
GCTTGTACTACTCAGAACTAAAGAGCACGCAGAATTTATTTAAAGTCGCAAACCATAAACAAGCATTAACCCAATTTGAT
TTATCTGATATACAACTACATATTGGTGAAATTGAAGAAATGAATGAAGTGAGTTATGCAGCATCACAAAAAGATGCATT
GGAATGTGCGTTACAAAATAAAGTGATGTTGTTAACAGGCGGGCCGGGTACAGGTAAAACCACTGTAATTAAGGGCATTG
TTCAATTATACGCTGAAATGCACGGTCTCTCACTTGATTATGATGATTATGACGAAGGAGAAGCTTTTCCAGTCGTACTT
GCTGCACCAACAGGGCGTGCATCGAAGCGACTTCATGAGTCAACAGGACTTGAAGCAATGACAATTCATCGGCTTATCGG
TTGGAATCAAGAGACGAAGCCAGATGACTTGTTGGAACATGAAATTGATGCAAGGTTGATTATCATCGATGAGATGTCGA
TGGTGGATACGTGGCTCTTTCACCAATTCATGAATGCTGTGCCACTGGATGCTCAAATTGTACTGGTAGGCGATGAAGAC
CAATTACCATCTGTCGGACCAGGACAAGTGTTTAAAGACTTAATAGACGCCGATGTGTTACCGAGAATTAACTTAACAGA
AGTGTATCGTCAACAAGATGGATCGAGCATTATAGATTTGGCACATCGCATTAAGTTAGGTCAAGATGTAGATATTACGA
AAAGATATCACGACCGCTCATTTATCGCATGTCAAACACATCAAATTCCAGAGATTGTCGATAAAATTGTATCCAATGCA
GTTGGCAAAGGATATACAATGTCGGATATTCAAGTACTCGCACCGATGTATCGAGGGAGTGCAGGGATTCAAAAACTCAA
TCAAGTTCTTCAAAATATATTGAATCCCAAAGAAGGCGATGATCATCGTGAAGTCGCATTCGGTGATGTGTTATTCCGTA
AAGGTGATAAAGTGTTACAGTTAGTGAACCGACCGGACGACAATGTGTTTAACGGAGATATCGGTGAGATTATCGGTATC
TTTTGGGCAAAGGAGAATGCCTTGAATAAAGATGTCGTTATTGTTGATTATGAAGGGAACGAGATTACCTATATGCGATC
CGACCTTACAGAATTAACACATGCTTATTGTACGTCGATTCATAAGTCGCAAGGATCAGAGTTTCCAATTGTCATTATGC
CGATTGTCAAACAGTATTATCGCATGCTCCAGAAGCCAATATTGTATACAGGACTAACACGTGCAAAACAATCACTCGTA
TTCTTGGGTGATGCGGATGCGTTTAACATGGGACTACAAACTGAAGGGCAGACACGTTTAACGCAGTTACAAACTTTTTT
AACGATGTACTTTAAAGGAGATACGGAAGACAGTGAGACGAACGATGCAGTTGAGACAACATTTGTGCTAACTGAGTCAA
ATATGTATCAAGTCAATCCGATGATTAATATGGGTGAAACAACACCTTATGATTTTTTAGAAATTGACAAAAGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.118

99.499

0.489