Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA88_RS05385 Genome accession   NZ_CP094718
Coordinates   1105899..1108304 (+) Length   801 a.a.
NCBI ID   WP_262603179.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100899..1113304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS05360 (MUA88_05350) - 1101087..1101278 (+) 192 WP_262603174.1 CsbD family protein -
  MUA88_RS05365 (MUA88_05355) - 1101441..1102454 (-) 1014 WP_262605175.1 LLM class flavin-dependent oxidoreductase -
  MUA88_RS05370 (MUA88_05360) - 1102831..1103979 (+) 1149 WP_262605176.1 cysteine desulfurase family protein -
  MUA88_RS05375 (MUA88_05365) mnmA 1103976..1105088 (+) 1113 WP_262603177.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA88_RS05380 (MUA88_05370) - 1105225..1105896 (+) 672 WP_262603178.1 tetratricopeptide repeat protein -
  MUA88_RS05385 (MUA88_05375) recD2 1105899..1108304 (+) 2406 WP_262603179.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA88_RS05390 (MUA88_05380) alaS 1108552..1111182 (+) 2631 WP_262605177.1 alanine--tRNA ligase -
  MUA88_RS05395 (MUA88_05385) - 1111248..1111523 (+) 276 WP_262603181.1 IreB family regulatory phosphoprotein -
  MUA88_RS05400 (MUA88_05390) ruvX 1111516..1111944 (+) 429 WP_262603182.1 Holliday junction resolvase RuvX -
  MUA88_RS05405 (MUA88_05395) - 1111958..1112278 (+) 321 WP_262603183.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90162.27 Da        Isoelectric Point: 4.3954

>NTDB_id=671134 MUA88_RS05385 WP_262603179.1 1105899..1108304(+) (recD2) [Staphylococcus sp. IVB6240]
MENPTLLDSTYVKGEVIRILFQNTDNYYTVLKVDVADTNGDFEDEVTVVGYFPDIVEDETYLFKGYVVQHARYGQQLKAE
TFQKELPQTKDAIIAYLSSSLFKGIGVKTAEAIVETLGEDAIHQILNDESCLSRVPKLSKDKQEQIAQQVYQNQESEQIM
IRLNELGFGSKLAMDIYKFYQADTLKVLDNNPYQLVYDIKGVGFQKADQLAQQLGIHPLHQDRLRAGILYVVEETCLKNG
HTYLPTDALIHAAIELLSKNQSEVIEEAPMQECMTQLVEEQKLIAVDEVVAIPSLYYSELKSTQNLFKVANDKKSLTKFD
LSDIQLNIGEIEEMNEVSYATSQKEALECALQNKVMLLTGGPGTGKTTVIKGIVQLYAEMHGLSLDYDDYDEGDAFPVVL
AAPTGRASKRLHESTGLEAMTIHRLIGWNQETKPDDLLEHEIDARLIIIDEMSMVDTWLFHQFMNAVPKDAQVVLVGDED
QLPSVGPGQVFKDLIDADVLPRINLTEVYRQQDGSSIIDLAHRIKLGKDVDITQRYHDRSFIPCQTHQIPEIVDKIVTNA
VGKGYTMADIQVLAPMYRGSAGIQKLNQVLQNILNPKEDDDHREVAFGDVLFRTGDKVLQLVNRPDDNVFNGDIGEIIGI
FWAKENALNKDVVIVDYEGNEITYMRSDLVELTHAYCTSIHKSQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLV
FLGDAEAFNMGLQTQGQTRLTQLYTFLTMYFKGDSESDADGQADTEAATFVLTESNMYQVNPMINMGETTPYDFLEIDKG
S

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=671134 MUA88_RS05385 WP_262603179.1 1105899..1108304(+) (recD2) [Staphylococcus sp. IVB6240]
ATGGAAAACCCAACGCTTTTAGATAGCACTTATGTAAAGGGTGAAGTGATACGTATTTTATTTCAAAATACTGATAACTA
CTACACGGTCTTAAAAGTGGATGTTGCTGATACAAATGGCGACTTTGAAGATGAAGTGACGGTCGTTGGGTATTTTCCGG
ATATTGTGGAAGATGAAACGTATCTTTTCAAAGGTTACGTCGTTCAGCATGCACGTTACGGCCAACAACTGAAAGCAGAA
ACGTTTCAAAAAGAACTTCCTCAGACGAAAGATGCAATTATTGCCTATCTTTCTAGCTCACTGTTCAAAGGAATTGGTGT
CAAAACAGCGGAGGCTATTGTAGAAACGCTTGGTGAAGATGCCATACATCAAATTTTGAATGATGAATCGTGTTTATCAC
GTGTTCCAAAACTATCGAAGGACAAGCAGGAACAAATTGCCCAACAAGTCTATCAAAATCAGGAAAGTGAACAAATTATG
ATTCGCTTAAATGAGCTTGGCTTTGGGTCAAAACTCGCAATGGATATTTATAAGTTTTATCAAGCAGATACATTGAAAGT
ACTGGATAATAATCCGTATCAATTGGTCTATGACATCAAAGGGGTTGGTTTCCAAAAAGCGGACCAATTAGCCCAACAAT
TAGGAATTCATCCTTTACATCAAGATCGTCTGCGCGCGGGCATTCTTTATGTTGTAGAAGAAACATGTCTGAAAAATGGA
CATACGTATTTACCAACAGATGCATTGATTCATGCGGCAATTGAATTGTTATCTAAAAATCAGTCAGAAGTGATTGAAGA
AGCCCCTATGCAAGAATGTATGACGCAATTAGTAGAAGAACAAAAACTGATTGCAGTAGATGAAGTCGTGGCAATACCAA
GTCTTTATTATTCGGAACTAAAAAGCACACAAAATTTATTTAAAGTCGCAAATGATAAGAAATCACTTACGAAATTTGAT
TTGTCCGATATCCAACTCAATATAGGAGAAATTGAAGAAATGAATGAAGTGAGTTATGCCACATCGCAAAAAGAAGCGTT
AGAATGTGCACTTCAAAACAAGGTTATGTTATTAACGGGTGGTCCTGGTACAGGAAAGACAACGGTGATTAAAGGCATCG
TTCAGTTATATGCGGAGATGCATGGATTGTCACTAGACTATGATGATTATGATGAAGGCGATGCATTTCCAGTAGTCCTT
GCTGCACCTACGGGACGTGCTTCTAAACGACTTCATGAATCCACAGGTCTTGAAGCAATGACGATACATCGACTGATTGG
CTGGAATCAAGAGACAAAACCAGATGACTTGTTGGAACATGAAATTGATGCACGCTTGATTATAATTGATGAGATGTCAA
TGGTAGATACATGGTTGTTCCATCAATTTATGAATGCCGTTCCTAAAGATGCCCAAGTTGTACTAGTGGGTGATGAAGAC
CAGTTACCATCAGTTGGACCTGGACAAGTGTTTAAAGATTTAATTGACGCAGATGTCTTACCGAGAATTAATTTGACTGA
AGTGTATCGTCAACAAGATGGTTCTAGTATCATTGATTTGGCACATCGCATAAAGTTAGGAAAAGATGTTGATATTACCC
AACGCTATCATGACCGTTCATTTATCCCGTGTCAGACACATCAAATACCAGAAATCGTTGATAAAATTGTAACGAATGCG
GTCGGCAAAGGTTATACAATGGCAGATATACAAGTGCTCGCACCGATGTATCGTGGTAGTGCTGGTATTCAAAAATTGAA
CCAGGTGCTGCAAAACATCTTAAATCCTAAAGAAGATGATGATCATCGTGAAGTCGCTTTTGGAGACGTCTTATTCCGAA
CTGGAGATAAAGTCTTACAATTGGTTAACCGACCAGATGATAACGTGTTTAACGGAGATATCGGTGAAATCATTGGGATA
TTTTGGGCGAAAGAAAATGCATTGAATAAAGATGTGGTCATTGTAGATTATGAGGGCAATGAGATTACATATATGCGGTC
TGACCTTGTTGAGTTAACGCATGCTTACTGCACGTCTATTCATAAATCTCAAGGTTCAGAATTCCCAATAGTCATCATGC
CAATTGTTAAACAATACTATCGCATGCTTCAAAAACCTATTTTATATACAGGATTAACACGTGCCAAACAATCACTTGTA
TTCTTAGGAGATGCAGAAGCGTTCAATATGGGACTTCAAACACAAGGTCAAACACGATTGACACAGTTATATACGTTCTT
AACAATGTATTTTAAAGGGGATTCAGAATCCGATGCAGATGGACAGGCTGACACTGAAGCAGCTACATTTGTACTCACTG
AGTCTAATATGTATCAGGTAAATCCAATGATCAATATGGGAGAGACGACCCCGTATGACTTTTTGGAAATTGACAAAGGT
TCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.246

99.376

0.489