Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA40_RS05800 Genome accession   NZ_CP094712
Coordinates   1240872..1243265 (+) Length   797 a.a.
NCBI ID   WP_262570044.1    Uniprot ID   -
Organism   Staphylococcus schleiferi strain IVB6183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235872..1248265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA40_RS05775 (MUA40_05760) - 1236066..1236527 (-) 462 WP_155976504.1 transposase family protein -
  MUA40_RS05780 (MUA40_05765) - 1236708..1237718 (-) 1011 WP_016425255.1 LLM class flavin-dependent oxidoreductase -
  MUA40_RS05785 (MUA40_05770) - 1237926..1239074 (+) 1149 WP_016425254.1 cysteine desulfurase family protein -
  MUA40_RS05790 (MUA40_05775) mnmA 1239071..1240183 (+) 1113 WP_016425253.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA40_RS05795 (MUA40_05780) - 1240195..1240869 (+) 675 WP_262570084.1 tetratricopeptide repeat protein -
  MUA40_RS05800 (MUA40_05785) recD2 1240872..1243265 (+) 2394 WP_262570044.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA40_RS05805 (MUA40_05790) alaS 1243509..1246139 (+) 2631 WP_016425250.1 alanine--tRNA ligase -
  MUA40_RS05810 (MUA40_05795) - 1246202..1246474 (+) 273 WP_016425249.1 IreB family regulatory phosphoprotein -
  MUA40_RS05815 (MUA40_05800) ruvX 1246467..1246895 (+) 429 WP_016425248.1 Holliday junction resolvase RuvX -
  MUA40_RS05820 (MUA40_05805) - 1246909..1247226 (+) 318 WP_016425247.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90672.23 Da        Isoelectric Point: 4.6218

>NTDB_id=670969 MUA40_RS05800 WP_262570044.1 1240872..1243265(+) (recD2) [Staphylococcus schleiferi strain IVB6183]
MDNPTLFDQTYVKGTVEMILFQNNENYYTVLKVDVQDSNGDFDDMVTVVGYFPNMVEDETYLFKGSVVQHPKYGKQLKAE
TFQKEIPQTKDAVIAYLSSDLFKGIGKKTAELIVETIGENAINEILKDNQVIEKVPKLSKKKQEQIVQQIITNQESEQVM
IRLNELGFGSKLAMDIYKFYQHETLNVLDQNPYQLVYDIKGVGFQKADQLAQQLGIHPNHPDRLKAGLLFLVEETCIKQG
HTYLPQEALINETIQLLSKNEGEDIRYEAIEDIMVQLTEEKKLIEVDHMIAIPSLYYSEIKSTQNLFRVYSHNEALTQFE
RSDIQLHIGEIEEMNEVHYATSQKEALECAINHKVMLLTGGPGTGKTTVIKGIVQLYSEIHGVSLDYDDYHDNDYPIVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQETKPDDILDNEINAKLIIIDEMSMVDTWLFHQFMAAVPLDAQIIFVGDEDQ
LSSVGPGQVFKDLIDSNVLPRINLTEVYRQQEGSSIIELAHKMKLGEPVDITQRFHDRSFIPCSTEQIPDVVEKVVNNAV
QKGYTMADIQVLAPMYRGNAGIKRLNQILQSILNPVQDKSKREIVFGDVIYRKGDKVLQLINRPNDNVFNGDIGIIVGIF
WAKENALNKDVVVVDYDGNENTYMKSDLTELTHAYCTSIHKAQGSEFPIVLMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDSEAFNMGLATEGKARLTQLHSFLTQYFNNDTEEYNQDNQEDLPIELTEATMFKINPMINMGEVTPYDFLEIDKA

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=670969 MUA40_RS05800 WP_262570044.1 1240872..1243265(+) (recD2) [Staphylococcus schleiferi strain IVB6183]
ATGGATAATCCAACACTGTTTGATCAAACCTATGTAAAAGGGACAGTTGAAATGATATTGTTCCAAAATAACGAAAACTA
CTATACAGTGCTGAAAGTCGATGTACAAGATTCAAATGGCGACTTCGATGACATGGTCACAGTCGTTGGATATTTTCCAA
ATATGGTCGAAGATGAAACGTATTTATTTAAAGGAAGCGTTGTCCAACATCCAAAGTATGGTAAACAGTTAAAAGCTGAA
ACTTTCCAGAAAGAAATTCCACAAACTAAAGATGCGGTAATTGCATATTTATCAAGCGACTTATTCAAAGGTATTGGTAA
AAAAACAGCAGAACTGATTGTCGAAACAATCGGAGAAAATGCAATTAATGAAATATTGAAAGATAATCAAGTCATCGAAA
AGGTTCCAAAACTTTCTAAAAAGAAGCAAGAACAAATTGTGCAGCAAATTATTACCAATCAAGAAAGTGAACAAGTGATG
ATACGCCTCAATGAATTAGGATTTGGATCAAAATTAGCGATGGATATTTATAAATTTTATCAACATGAAACGCTTAATGT
ACTAGATCAAAATCCTTATCAATTGGTTTACGATATCAAGGGAGTTGGTTTTCAAAAAGCGGATCAACTTGCACAGCAAT
TAGGCATTCATCCGAATCATCCTGATCGTCTAAAAGCCGGGCTATTATTTTTAGTTGAAGAAACTTGTATTAAACAAGGG
CATACGTACTTACCACAAGAGGCGCTTATCAATGAGACCATACAACTTCTTTCTAAAAATGAGGGTGAAGACATTCGTTA
TGAAGCCATTGAAGACATCATGGTTCAATTGACTGAAGAAAAAAAGTTAATAGAAGTTGATCACATGATTGCCATACCAA
GTCTATATTATTCTGAAATTAAAAGCACACAAAATTTATTCAGAGTTTATAGTCATAATGAAGCACTGACGCAATTTGAA
CGTTCAGATATTCAACTGCATATTGGTGAAATCGAAGAGATGAATGAAGTCCATTATGCTACCTCTCAAAAAGAAGCGTT
AGAATGTGCAATCAATCATAAAGTTATGTTATTAACTGGTGGTCCGGGAACAGGGAAAACAACGGTTATTAAAGGTATCG
TTCAACTTTACTCAGAGATTCATGGTGTGTCTCTTGATTATGATGATTACCATGATAACGACTATCCAATTGTTTTAGCA
GCACCAACGGGACGTGCGTCGAAACGATTGCATGAATCAACAGGCTTAGAAGCCATGACGATACATCGTTTAATAGGTTG
GAATCAAGAAACGAAGCCGGATGATATTTTGGATAATGAAATTAATGCCAAACTAATTATTATAGATGAGATGTCTATGG
TGGATACGTGGTTATTCCATCAATTTATGGCTGCCGTGCCGTTAGATGCACAAATCATTTTCGTTGGGGATGAAGACCAG
TTATCATCCGTTGGTCCGGGGCAGGTTTTTAAAGACCTTATCGATTCGAATGTGCTACCTAGAATTAATTTAACTGAAGT
ATACAGACAACAAGAGGGTTCAAGTATTATAGAACTTGCACACAAAATGAAACTAGGTGAGCCTGTTGATATTACCCAGC
GTTTCCATGATCGTTCTTTTATACCCTGTAGTACCGAACAAATTCCTGACGTCGTTGAAAAGGTTGTAAATAATGCAGTA
CAAAAAGGTTATACGATGGCTGACATTCAAGTTTTAGCACCTATGTATAGAGGGAACGCTGGTATTAAAAGATTAAATCA
GATTTTACAATCCATTCTTAATCCAGTTCAAGATAAGTCTAAGCGAGAAATTGTATTTGGTGATGTGATTTATCGTAAAG
GCGATAAAGTATTACAACTCATCAACAGACCGAACGACAATGTTTTTAATGGTGACATTGGCATCATTGTCGGCATTTTT
TGGGCGAAAGAAAATGCCCTTAACAAAGATGTCGTTGTCGTAGATTATGACGGTAATGAAAACACTTATATGAAATCAGA
TTTAACAGAACTTACACATGCTTATTGTACCTCTATTCATAAAGCGCAAGGCTCAGAATTTCCGATTGTTCTTATGCCCA
TCGTCAAACAATATTATCGAATGCTTCAAAAGCCGATTCTTTATACGGGATTGACACGGGCTAAACAATCTCTTGTATTT
TTAGGTGATTCAGAAGCTTTCAATATGGGGCTAGCCACAGAAGGTAAGGCACGTTTAACACAATTACATTCATTTTTAAC
GCAATATTTTAATAATGACACTGAAGAATATAATCAAGACAATCAAGAGGACTTACCAATCGAATTGACCGAAGCAACCA
TGTTTAAAATCAATCCTATGATTAATATGGGTGAAGTCACACCATACGATTTTCTTGAAATTGACAAAGCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.439

100

0.516