Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG902_RS27600 Genome accession   NZ_CP109115
Coordinates   6144901..6147132 (+) Length   743 a.a.
NCBI ID   WP_326743161.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01768     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6139901..6152132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG902_RS27560 (OG902_27525) - 6140199..6140957 (+) 759 WP_266493638.1 HNH endonuclease -
  OG902_RS27565 (OG902_27530) - 6141014..6141241 (-) 228 WP_266493640.1 DUF397 domain-containing protein -
  OG902_RS27570 (OG902_27535) - 6141213..6142052 (-) 840 WP_266619775.1 helix-turn-helix transcriptional regulator -
  OG902_RS27575 (OG902_27540) - 6142214..6142597 (+) 384 WP_266493643.1 hypothetical protein -
  OG902_RS27580 (OG902_27545) - 6142594..6142929 (+) 336 WP_266493645.1 hypothetical protein -
  OG902_RS27585 (OG902_27550) - 6143041..6143694 (+) 654 WP_266493646.1 hypothetical protein -
  OG902_RS27590 (OG902_27555) - 6143700..6144065 (-) 366 WP_266500291.1 helix-turn-helix domain-containing protein -
  OG902_RS27595 (OG902_27560) - 6144190..6144846 (+) 657 WP_266493647.1 NAD(P)H-binding protein -
  OG902_RS27600 (OG902_27565) recD/recD2/recDB 6144901..6147132 (+) 2232 WP_326743161.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG902_RS27605 (OG902_27570) - 6147330..6148619 (+) 1290 WP_072489174.1 citrate synthase -
  OG902_RS27610 (OG902_27575) - 6149115..6151502 (-) 2388 WP_326742220.1 heavy metal translocating P-type ATPase -
  OG902_RS27615 (OG902_27580) - 6151621..6151929 (-) 309 WP_326742221.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 79945.67 Da        Isoelectric Point: 6.5913

>NTDB_id=670944 OG902_RS27600 WP_326743161.1 6144901..6147132(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01768]
MPNLAVLEGVLERITYANEENGYTVARVDTGRGANDLLTVVGSLLGAQPGESLRMEGRWSSHSQYGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEKEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIECLAELAEDPEGVVREKVPSPEGGELVTAIYLVPFHRAEVALAAQVQRLLRTPEERMPAFADVD
WDKALAWLGTRTGAKLAPEQEAAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLLKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAD
GSPVPAVRLTTIFRQAQQSGVVTNAHRINSGIPPLTQGLKDFFLFVEDETEDAGVLAVDVAARRIPAKFGLDARRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPNLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDLDEQTLTVLT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTKSAWMMLQRNLLYTAVTRAKKLVVLVGSRQAIGQAVRTVS
AGRRCTALDYRLSGGSGGGSAEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=670944 OG902_RS27600 WP_326743161.1 6144901..6147132(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01768]
ATGCCGAACCTGGCCGTCCTCGAAGGTGTGCTGGAGCGCATCACGTACGCCAACGAGGAGAACGGATACACGGTCGCGCG
CGTCGATACCGGACGCGGCGCCAACGATCTGCTCACCGTGGTCGGTTCGCTGCTCGGTGCGCAGCCCGGTGAGTCGCTGC
GCATGGAAGGGCGCTGGAGTTCGCACTCGCAGTACGGCAAGCAGTTCACCGTTGAGAACTACACGACGATCCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGGCTGATCAAGGGCATCGGCCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTAGACATCATCGAGAAGGAACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGACCCAAGC
GCACGAAGATGATCGCCGCGGCGTGGGAGGAGCAGAAGGCGATCAAGGAGGTGATGGTCTTCCTCCAGGGCGTCGGCGTT
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGGCGGTCGGCATCCCGCACGACAGCCCGG
AGAGGGTCAAGGCCGGTCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTCCCCGAGGAGCGGCTG
ATCGCGGACGGGGTGAAGCTGCTCCAGGTCGACACCGGCCTGGTCATCGAGTGCCTCGCCGAGCTGGCCGAGGACCCGGA
GGGAGTCGTACGGGAGAAGGTGCCCTCGCCCGAGGGCGGCGAACTCGTCACCGCCATCTACCTCGTGCCCTTCCACCGTG
CCGAGGTCGCCCTCGCCGCCCAGGTGCAGCGGCTGCTGCGGACGCCCGAGGAGCGGATGCCGGCCTTCGCGGACGTGGAC
TGGGACAAGGCGCTGGCCTGGCTCGGTACGCGTACGGGGGCGAAGCTGGCGCCCGAGCAGGAGGCGGCGGTCCGGCTCGC
GCTCAGCCGGAAGGTCGCGGTGCTGACCGGCGGGCCCGGCTGCGGGAAGTCGTTCACCGTCCGGTCGATCGTGGAGCTGG
CACGGGCCAAGAAGGCCAAGGTGGTGCTGGCCGCGCCGACCGGGCGGGCGGCCAAGCGGCTCTCCGAGCTGACCGGCGCC
GAGGCCTCCACCGTCCACCGGCTGCTCGAACTGAAGCCGGGCGGCGACGCCGCGTACGACCGGGACCGTCCGCTGGACGC
CGATCTGGTGGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGTTGCTGAAGGCGGTGGCACCCGGTG
CCCATCTGCTGCTCGTCGGGGACGTCGACCAGCTGCCCTCGGTAGGTGCGGGGGAGGTGCTGCGCGATCTGCTCGCCGAC
GGCAGCCCCGTTCCCGCGGTCCGGCTCACCACGATCTTCCGCCAGGCCCAGCAGTCCGGCGTCGTCACCAACGCACACCG
GATCAACTCCGGCATTCCTCCCCTCACTCAGGGCCTCAAGGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCCG
GAGTGCTCGCGGTGGATGTCGCGGCCCGGCGCATTCCGGCCAAGTTCGGGCTGGACGCGCGCCGGGACGTGCAGGTCCTC
GCCCCGATGCACCGCGGCCCGGCCGGCGCGGGCACGCTCAACGGACTCCTCCAGCAGGCCATCACCCCGGCCCGCCCGAA
CCTCCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GGGAGAACGGCGTCTTCAACGGCACGGTCGGCGTCGTCACCGCCCTTGACCTGGACGAACAGACGCTGACGGTGCTCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTCGACGAGCTGGCGCACGCGTACGCCATGACGATCCACCGTTC
CCAGGGCAGCGAGTACCCGGCCGTCGTCATCCCGGTGACGAAGAGCGCCTGGATGATGCTCCAGCGGAACCTGCTGTACA
CCGCTGTGACCAGGGCCAAGAAGCTCGTCGTGCTGGTCGGCTCACGGCAGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGCTGTACGGCGCTGGATTACCGGCTGTCGGGGGGCTCGGGCGGAGGATCGGCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.602

100

0.366