Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OG902_RS12030 Genome accession   NZ_CP109115
Coordinates   2751985..2753613 (-) Length   542 a.a.
NCBI ID   WP_266490288.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01768     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2746985..2758613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG902_RS12010 (OG902_12000) - 2748293..2748862 (+) 570 Protein_2393 M23 family metallopeptidase -
  OG902_RS12015 (OG902_12005) - 2748943..2749509 (-) 567 WP_266499825.1 TetR/AcrR family transcriptional regulator -
  OG902_RS12020 (OG902_12010) whiG 2749628..2750464 (-) 837 WP_124716122.1 RNA polymerase sigma factor WhiG -
  OG902_RS12025 (OG902_12015) dprA 2750705..2751859 (-) 1155 WP_241196274.1 DNA-processing protein DprA -
  OG902_RS12030 (OG902_12020) comM 2751985..2753613 (-) 1629 WP_266490288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OG902_RS12035 (OG902_12025) - 2753613..2753972 (-) 360 WP_124716125.1 YraN family protein -
  OG902_RS12040 (OG902_12030) - 2754165..2754473 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  OG902_RS12045 (OG902_12035) - 2754538..2755026 (-) 489 WP_266490289.1 NUDIX hydrolase -
  OG902_RS12050 (OG902_12040) lepB 2755016..2755765 (-) 750 WP_266490290.1 signal peptidase I -
  OG902_RS12055 (OG902_12045) lepB 2755818..2756762 (-) 945 WP_266623518.1 signal peptidase I -
  OG902_RS12060 (OG902_12050) lepB 2757003..2757899 (-) 897 WP_266499833.1 signal peptidase I -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 55907.29 Da        Isoelectric Point: 7.2299

>NTDB_id=670907 OG902_RS12030 WP_266490288.1 2751985..2753613(-) (comM) [Streptomyces sp. NBC_01768]
MGFARACSVALVGVEGVVVEVQADLEAGVAAFTLVGLPDKSLVESRDRVRAAVANSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPASIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPDERQAHDEGRPDTMLAGLMVPGAGIGTGLARGAGQGDGHLPDLADVAGQERPRMALEVAAAGGHHL
LLSGPPGAGKTMLAERLPAILPELTRKESLEVTAVHSVAGILPPGEPLVSRPPYCAPHHSATMQSLIGGGNGLPRPGAVS
LAHRGILFLDEAPEFSVRALDALRQPLESGHVVVARSAGVVRLPARFLMALAANPCPCGRHSLSGAGCECPPSAVRRYQA
RLSGPLLDRVDLRVLVDPVRREDLMGQGGRGESTAAVAARVRQARARAAARLAGTAWSTNSEVPGHELRTRLVAAPGALM
EAERDMERGLLTARGLDRVLRVAWTVADLRGADRPDAADVAVALELRTGIPRGALTNAGTQT

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=670907 OG902_RS12030 WP_266490288.1 2751985..2753613(-) (comM) [Streptomyces sp. NBC_01768]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCGCTGGTCGGCGTCGAGGGTGTGGTGGTGGAGGTCCAGGCGGACCTGGAGGC
GGGGGTGGCCGCGTTCACCCTGGTGGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGCGACCGGGTCAGGGCCGCGGTGG
CGAACTCGGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTGGGCCTGTCGCCGGCCTCGGTGCCGAAGGGCGGATCCGGG
TTCGATCTCGCCGTCGCCTGTGCGGTGCTGGGGGCGGCCGAGCGGATCGATCCGGCTTCCATCGCCGATGTGGTGATGAT
CGGTGAGCTGGGGCTCGACGGCCGGGTGCGGCCGGTGCGCGGGGTGCTGCCCGCCGTGCTCGCCGCGGCCGAGGCCGGAT
ACCGGCAGGTCGTCGTGCCGGAACAGACCGCGGGCGAGGCGGCGCTGGTCCCCGGAGTCTCCGTCCTCGGGGTACGGAGC
CTGCGGCAGCTGATCGCGGTGCTCTGCGACGAGCCGGTGCCCGACGAGCGGCAGGCACACGACGAGGGGCGCCCCGACAC
CATGCTGGCCGGGCTGATGGTGCCCGGCGCGGGCATCGGCACCGGCCTCGCCCGCGGCGCCGGGCAGGGCGACGGACATC
TGCCGGATCTGGCGGACGTGGCGGGGCAGGAGCGGCCCCGCATGGCTCTTGAGGTCGCCGCCGCGGGCGGTCACCACCTC
CTGCTCTCGGGGCCGCCGGGAGCAGGCAAGACCATGCTGGCCGAGCGGCTGCCGGCCATCCTGCCGGAGCTGACCAGGAA
GGAATCCCTGGAGGTGACCGCGGTCCACTCGGTGGCGGGCATCCTGCCGCCGGGGGAGCCCCTGGTCAGCCGGCCGCCCT
ACTGCGCACCCCACCACTCGGCGACGATGCAGTCGCTGATCGGCGGGGGCAACGGACTGCCGAGGCCCGGTGCGGTCTCG
CTGGCTCATCGGGGAATTCTTTTTCTGGACGAGGCGCCCGAATTCTCCGTGCGGGCGCTGGACGCGCTGCGCCAGCCGCT
GGAATCGGGGCATGTGGTGGTGGCACGGAGCGCCGGAGTGGTGCGGCTGCCCGCCAGATTTCTGATGGCGCTGGCGGCCA
ACCCATGCCCGTGCGGCCGGCACAGCCTCAGCGGCGCCGGCTGCGAATGCCCGCCGTCCGCGGTCAGGCGCTACCAGGCG
AGACTCTCCGGGCCGCTGCTCGACCGGGTGGATCTGCGGGTGCTCGTCGACCCGGTCAGGCGTGAGGACCTGATGGGGCA
GGGCGGCCGGGGCGAGTCGACGGCCGCGGTGGCGGCCCGGGTCCGGCAGGCCAGGGCGCGGGCCGCGGCGCGGCTCGCGG
GCACCGCGTGGTCCACCAACAGCGAGGTACCCGGCCATGAGCTGCGGACCAGGCTGGTCGCGGCCCCGGGCGCGCTCATG
GAGGCCGAGCGGGACATGGAACGCGGCCTGCTCACCGCGCGGGGCCTGGACCGGGTGCTCAGAGTGGCGTGGACGGTCGC
CGATCTGCGCGGCGCCGACCGCCCGGATGCCGCCGACGTCGCGGTGGCGCTGGAACTGCGCACCGGGATTCCGCGGGGTG
CCCTGACGAACGCCGGGACGCAGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-423)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-527)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.546

94.649

0.384
  comM Vibrio cholerae strain A1552

40.546

94.649

0.384
  comM Vibrio campbellii strain DS40M4

39.024

98.339

0.384
  comM Acinetobacter baylyi ADP1

38.068

97.417

0.371