Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHB04_RS26820 Genome accession   NZ_CP109104
Coordinates   6022835..6025081 (+) Length   748 a.a.
NCBI ID   WP_326808474.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01775     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6017835..6030081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB04_RS26805 (OHB04_26825) - 6018007..6019882 (-) 1876 Protein_5304 substrate-binding domain-containing protein -
  OHB04_RS26810 (OHB04_26830) - 6019989..6021548 (-) 1560 WP_326690206.1 sugar ABC transporter ATP-binding protein -
  OHB04_RS26815 (OHB04_26835) cytR 6021545..6022579 (-) 1035 WP_326690207.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB04_RS26820 (OHB04_26840) recD/recD2/recDB 6022835..6025081 (+) 2247 WP_326808474.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHB04_RS26825 (OHB04_26845) - 6025232..6026548 (+) 1317 WP_326690209.1 citrate synthase -
  OHB04_RS26830 (OHB04_26850) - 6027312..6027530 (-) 219 WP_326690210.1 heavy-metal-associated domain-containing protein -
  OHB04_RS26835 - 6027823..6028248 (+) 426 Protein_5310 VTT domain-containing protein -
  OHB04_RS26840 - 6028834..6029028 (-) 195 WP_326692921.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 80422.04 Da        Isoelectric Point: 7.5957

>NTDB_id=670862 OHB04_RS26820 WP_326808474.1 6022835..6025081(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01775]
MTFQPAVLEGVLERITYANEDNGYTVARVDTGRGGELLTVVGALLGAQAGESLRMEGRWGSHPQYGRQFHVDNYVTVLPA
TIQGIRRYLGSGLVKGVGPRIADRIVTHFGVDTLEVIEADPKKLIEVPGLGPKRTKLIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKQYGDASISVVRGNPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVKAGLRHALSQSADQGHCYLPEERL
LSDAVKLLQVDTGLVIDCLGELAGEEEGVVREPVPDPEDPSRTLNAVYLIPFHRAEIALAAQLQRLLRTPEDRLPAFQSV
DWDKALGWLATRTGAELAPEQREAVRLALTRKVAVLTGGPGCGKSFTVRSVVELAAAKQARVLLAAPTGRAARRLSELTG
AEASTVHRLLELKPGGDAAYDRDRPLEADLVVVDEASMLDLLLANKLLKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLA
EGGPVPAVRLRRIFRQAQQSGVVTNAHRINSGAPPLTQGMSDFFLFVEEDTEAAGALTVDVAARRLPAKFGLDPRRDVQV
LAPMHRGPAGAGALNGLLQQAVTPARPGLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALNPDDQRLTVL
TEEDEEVGYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTV
SAGRRCTALDHRLRGLPAASTGALASRG

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=670862 OHB04_RS26820 WP_326808474.1 6022835..6025081(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01775]
ATGACGTTTCAGCCTGCGGTGCTCGAAGGGGTCCTAGAGCGCATCACCTACGCCAATGAGGACAATGGGTACACCGTCGC
GCGGGTGGACACCGGCCGCGGCGGCGAACTCCTCACGGTGGTGGGCGCGTTGCTGGGCGCGCAGGCGGGCGAATCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTACGGACGCCAGTTCCATGTGGACAACTACGTCACGGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCGGGGCTGGTCAAGGGGGTGGGCCCGCGCATCGCCGACCGCATCGTGAC
CCACTTCGGCGTGGACACCCTGGAGGTCATCGAGGCCGACCCGAAGAAGCTCATCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACCAAGCTCATCGCCGCCGCGTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGCAGTACGGCGACGCGTCGATCTCCGTGGTGCGCGGCAACCCCTACCGGCT
GGCGGCCGACGTGTGGGGCATCGGATTCCTGACCGCCGACCGCATCGCCCAGTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGACTGCGGCACGCCCTGTCGCAGTCGGCCGACCAGGGGCACTGCTATCTGCCCGAGGAGCGCCTC
CTCTCCGACGCCGTCAAGCTCCTCCAGGTCGACACGGGCCTGGTGATCGACTGCCTGGGCGAGCTGGCGGGGGAAGAGGA
AGGCGTGGTGCGCGAGCCGGTGCCCGACCCCGAGGACCCCTCCCGCACTCTGAACGCCGTCTATCTCATCCCCTTCCACC
GTGCGGAGATCGCGCTCGCCGCCCAGCTCCAGCGGCTGCTGCGCACCCCGGAGGACCGGCTGCCCGCCTTCCAGAGCGTC
GACTGGGACAAGGCCCTGGGCTGGCTCGCCACGCGCACCGGCGCGGAGCTGGCCCCCGAGCAGCGCGAGGCGGTGCGCCT
CGCGCTCACCCGAAAGGTCGCGGTGCTGACCGGGGGGCCGGGCTGCGGCAAGTCCTTCACCGTCCGCTCGGTGGTCGAGC
TGGCCGCCGCCAAGCAGGCCCGGGTGCTGCTGGCGGCGCCCACCGGGCGCGCCGCCAGACGGCTCTCCGAGCTGACCGGC
GCCGAGGCGTCCACGGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGCGACGCGGCCTACGACAGGGACCGCCCGCTGGA
GGCCGATCTGGTGGTGGTCGACGAGGCGTCCATGCTCGACCTGCTGCTGGCCAACAAGCTGCTGAAGGCCGTCCCGCCGG
GCGCCCATCTGCTGCTGGTCGGCGATGTGGACCAGCTGCCCTCGGTGGGCGCGGGGGAGGTGCTGCGCGATCTGCTGGCC
GAGGGCGGCCCGGTGCCCGCCGTGCGGCTGCGGCGCATCTTCCGCCAGGCCCAGCAGTCGGGTGTGGTGACCAACGCCCA
CCGCATCAACTCCGGCGCCCCGCCGCTCACCCAGGGAATGAGCGATTTCTTCCTCTTCGTGGAGGAGGACACGGAGGCCG
CGGGGGCGCTGACCGTGGATGTGGCGGCCCGCCGCCTCCCGGCGAAGTTCGGGCTGGATCCGCGCCGCGACGTGCAGGTC
CTGGCCCCGATGCACCGTGGCCCGGCCGGGGCGGGGGCGCTCAACGGGCTGCTCCAGCAGGCGGTCACCCCCGCGCGCCC
CGGGCTGCCGGAGAAGCGCTTCGGGGGACGCGTCTTCCGGGTGGGCGACAAGGTCACCCAGATACGGAACAACTACGAGA
AGGGGGCCAACGGGGTCTTCAACGGCACTGTCGGCGTGGTCACCGCCCTGAACCCCGACGACCAGCGGCTGACGGTGCTC
ACGGAGGAGGACGAGGAGGTCGGCTACGACTTCGACGAACTGGACGAGCTGGCGCACGCCTACGCCGTCACCATCCACCG
CTCCCAGGGCAGCGAGTATCCAGCGGTGGTGATTCCCGTCACCACAGGGGCATGGATGATGCTCCAGCGCAACCTGCTCT
ACACGGCCGTGACCCGGGCCAAGCGCCTCGTGGTGTTGGTCGGTTCCCGCAGGGCACTCGGCCAGGCCGTCCGTACGGTC
TCGGCCGGCCGGCGCTGCACGGCGCTCGACCACCGGCTGCGCGGGCTTCCGGCCGCCTCGACGGGCGCTTTGGCTTCCAG
GGGGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-142)

AAA domain (AAA_30)

(336-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.362