Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA54_RS06385 Genome accession   NZ_CP094704
Coordinates   1385041..1387455 (+) Length   804 a.a.
NCBI ID   WP_262553480.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380041..1392455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA54_RS06360 (MUA54_06345) - 1380521..1380727 (+) 207 WP_002481109.1 CsbD family protein -
  MUA54_RS06365 (MUA54_06350) - 1380824..1381828 (-) 1005 WP_002481108.1 LLM class flavin-dependent oxidoreductase -
  MUA54_RS06370 (MUA54_06355) - 1382011..1383153 (+) 1143 WP_002481107.1 cysteine desulfurase family protein -
  MUA54_RS06375 (MUA54_06360) mnmA 1383156..1384268 (+) 1113 WP_002481106.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA54_RS06380 (MUA54_06365) - 1384370..1385038 (+) 669 WP_002481105.1 tetratricopeptide repeat protein -
  MUA54_RS06385 (MUA54_06370) recD2 1385041..1387455 (+) 2415 WP_262553480.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA54_RS06390 (MUA54_06375) alaS 1387766..1390396 (+) 2631 WP_262553482.1 alanine--tRNA ligase -
  MUA54_RS06395 (MUA54_06380) - 1390465..1390728 (+) 264 WP_023015119.1 IreB family regulatory phosphoprotein -
  MUA54_RS06400 (MUA54_06385) ruvX 1390732..1391157 (+) 426 WP_002481101.1 Holliday junction resolvase RuvX -
  MUA54_RS06405 (MUA54_06390) - 1391182..1391493 (+) 312 WP_002481100.1 DUF1292 domain-containing protein -
  MUA54_RS06410 (MUA54_06395) - 1391736..1392377 (+) 642 WP_070864166.1 O-methyltransferase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90626.04 Da        Isoelectric Point: 4.5138

>NTDB_id=670821 MUA54_RS06385 WP_262553480.1 1385041..1387455(+) (recD2) [Staphylococcus simulans strain IVB6207]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDNMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGVGKKTAENIVNTLGENTINKILDDRSVLEEVPNLSKKKQSQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMSIYQVYQSDTLQTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTIEEECIKQG
HTFLPKDYVLETSLEMLSKGYDQTIDVSMLEKMILELTEESKLVEADETLSIPSLYYSEVKSVQNLYRIASHQAKLENIE
QSDLQINIGEIEEMNGVNYASSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETHGLSLSYDDYQEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDAKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITERFHDRSFIPCTAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
ARENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGHESETNEEQADEQINDQTTSAPAQQLVELTEATIYEIDPMIGMGKVTPYT
FNHE

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=670821 MUA54_RS06385 WP_262553480.1 1385041..1387455(+) (recD2) [Staphylococcus simulans strain IVB6207]
TTGGAGAACCCTACATTGTTTGACTATTCGATGGTCAAAGGAACAGTAGAAGCAATCTTATTTCAAAATAAAGATAATTT
CTATACCGTATTAAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATAATATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCTGAAGGCGATGTTTATACCTTCAAAGGTCAAGCTGTGACACACCCTAGATACGGTAAACAATTAAAAGCTGAA
ACTTTCGAAAAAGAAGTGCCGCAAACAAAAGATGCGATTATCAGTTACTTATCAAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCTGAAAATATCGTAAATACACTTGGTGAAAATACCATCAATAAAATTTTAGATGATCGTTCAGTCCTAGAAG
AAGTACCGAATTTATCTAAAAAGAAACAAAGCCAAATCGCAGATCAAATCTATAGTAACCAAGAAGTAGAAAAAATTATG
ATCAGACTTCATGATTTAGGCTTCGGTCCGAAATTAGCGATGAGCATCTATCAAGTTTATCAAAGTGACACCTTACAAAC
GATAGAGAAAAATCCATATGATCTTGTCTATGATGTACGTGGTGTCGGTTTCCATAAAGCAGATACTTTAGCTAAGAATT
TAGGCATAGAATATAACGCCCCTGAACGCTTAAAAGCAGGTCTGCTTTATACGATAGAAGAAGAATGTATTAAACAAGGT
CATACATTTTTACCTAAAGATTATGTATTAGAAACTTCGTTAGAGATGTTAAGCAAGGGATATGACCAAACGATAGATGT
CAGTATGTTAGAAAAAATGATACTTGAATTGACAGAAGAAAGTAAGTTGGTGGAAGCGGATGAAACACTTTCTATCCCAA
GCTTATATTATTCAGAAGTCAAAAGTGTGCAGAACCTGTATCGTATTGCGTCACATCAAGCTAAATTAGAGAATATTGAA
CAATCTGACTTACAAATCAATATTGGTGAAATCGAGGAAATGAATGGAGTCAACTACGCATCTTCTCAAAAAGAAGCACT
TGAAACAGCGATTAATTCAAAAGTCATGCTGCTGACAGGTGGTCCAGGTACCGGTAAAACAACGGTTATCAAAGGCATCG
TTGAACTCTATGCGGAAACGCATGGTTTATCCTTATCCTATGACGATTATCAAGAAGATGATTATCCGATAGCGCTTGCT
GCACCTACAGGACGTGCAGCCAAACGTTTACAAGAATCGACTGGACTTGAAGCAATGACCATCCATCGTTTAATCGGCTG
GAGTCAAGATACCAAGCCTGAAGATGTCTTGGAAAATGAAATTACTGCTAAGCTCATCATTATTGATGAAATGTCGATGG
TAGATACATGGTTGTTTCATCAGTTCTTAAATGCAGTGCCGATTGATGCACAAATCATTTTAGTCGGAGATGAAGACCAG
TTACCATCAGTCGGCCCAGGACAAGTGTTTAAAGATTTAATTGATGCGAAAGTCATTCCACGTGTTAATTTAACTGAAGT
CTACCGTCAACAAGATGGTTCTAGTATCATTGAACTCGCACATAAAATGAAATTAGGTCAGCCGATAGACATTACTGAGC
GTTTCCATGATCGCAGCTTTATTCCTTGTACAGCTGAACAAATACCAGATGTAGTCAATAAAGTGGTGAGTTCTGCTGTT
AAAAAAGGCTACGATATGAGCGATATTCAAGTCTTGGCTCCGATGTATCGCGGCAGTGCCGGCATTAAGCGTTTAAATAA
AGTATTACAAGATATCTTGAATCCTAAAGCTGAAGATGCAAGAGAGATTGAGTTCGGAGAAGCGGTCTTTAGAAAGGGCG
ACAAAGTCTTACAACTTGTGAATCGTCCTAATGATAATATTTTCAATGGTGATATCGGTGTGATTGTCGGTATCTTCTGG
GCACGTGAAAACGAATTAAATAAAGATATACTTGTCGTTGATTTCGAAGGCAATGAAATTACATTTACCAAACAAGATAT
GATGGAGTTAACACATGCTTATTGCACTTCCATTCATAAAGCACAAGGTTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGAATGTTGCAGCGTCCGATTATCTATACAGGACTTACACGTGCCAAACAATCTTTAGTTTTTCTT
GGTGACAGCCAAGCCTTTGACATCGGTATGAAGACCCATGGTCAAGTTCGTATGACGAGACTCGCACAATTGCTCAGAGA
TTACTTCGGTCATGAGAGTGAAACAAATGAAGAACAAGCAGATGAACAAATAAATGATCAAACAACCTCAGCACCTGCAC
AACAACTCGTAGAATTAACAGAAGCAACGATTTATGAAATTGACCCGATGATTGGTATGGGTAAGGTCACACCTTATACT
TTTAATCATGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.687

99.378

0.494