Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA73_RS06535 Genome accession   NZ_CP094696
Coordinates   1378367..1380781 (+) Length   804 a.a.
NCBI ID   WP_262556727.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6251     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1373367..1385781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA73_RS06510 (MUA73_06505) - 1373848..1374054 (+) 207 WP_002481109.1 CsbD family protein -
  MUA73_RS06515 (MUA73_06510) - 1374150..1375154 (-) 1005 WP_002481108.1 LLM class flavin-dependent oxidoreductase -
  MUA73_RS06520 (MUA73_06515) - 1375337..1376479 (+) 1143 WP_262556724.1 cysteine desulfurase family protein -
  MUA73_RS06525 (MUA73_06520) mnmA 1376482..1377594 (+) 1113 WP_002481106.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA73_RS06530 (MUA73_06525) - 1377696..1378364 (+) 669 WP_262556726.1 tetratricopeptide repeat protein -
  MUA73_RS06535 (MUA73_06530) recD2 1378367..1380781 (+) 2415 WP_262556727.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA73_RS06540 (MUA73_06535) alaS 1381092..1383722 (+) 2631 WP_002481103.1 alanine--tRNA ligase -
  MUA73_RS06545 (MUA73_06540) - 1383791..1384054 (+) 264 WP_023015119.1 IreB family regulatory phosphoprotein -
  MUA73_RS06550 (MUA73_06545) ruvX 1384058..1384483 (+) 426 WP_262556728.1 Holliday junction resolvase RuvX -
  MUA73_RS06555 (MUA73_06550) - 1384508..1384819 (+) 312 WP_002481100.1 DUF1292 domain-containing protein -
  MUA73_RS06560 (MUA73_06555) - 1385062..1385703 (+) 642 WP_262556729.1 O-methyltransferase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90536.93 Da        Isoelectric Point: 4.5138

>NTDB_id=670697 MUA73_RS06535 WP_262556727.1 1378367..1380781(+) (recD2) [Staphylococcus simulans strain IVB6251]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDNMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGVGKKTAENIVNTLGENTINKILDDRSVLEEVPNLSKKKQSQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMSIYQVYQSDTLQTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTIEEECIKQG
HTFLPKDYVLETSLEMLSKGYDQTIDVSMLEKVILELTEESKLVEADETLSIPSLYYSEVKSVQNLYRIASHQAKLENIE
QSDLQINIGEIEEMNGVNYASSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETHGLSLSYDDYQEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDAKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITERFHDRSFIPCTAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
ARENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGHEGETNEEQADEQTNDLTTSAPAQQLVELTEATIYEIDPMIGMGKVTPYT
FNHE

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=670697 MUA73_RS06535 WP_262556727.1 1378367..1380781(+) (recD2) [Staphylococcus simulans strain IVB6251]
TTGGAGAACCCTACATTGTTTGACTATTCGATGGTCAAAGGAACAGTAGAAGCAATCTTATTTCAAAATAAAGATAATTT
CTATACCGTATTAAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATAATATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCTGAAGGCGATGTTTATACCTTCAAAGGTCAAGCTGTGACACACCCTAGATACGGCAAACAATTAAAAGCTGAA
ACTTTCGAAAAAGAAGTACCGCAAACAAAAGATGCGATTATCAGTTACTTATCAAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCTGAAAATATCGTAAATACACTTGGTGAAAATACCATCAATAAAATTTTAGATGATCGTTCAGTCCTAGAAG
AAGTACCGAATTTATCTAAAAAGAAACAAAGCCAAATCGCAGATCAAATCTACAGTAATCAAGAAGTAGAAAAAATTATG
ATCAGACTTCATGATTTAGGCTTCGGTCCGAAATTAGCGATGAGCATCTATCAAGTTTATCAAAGTGACACCTTACAAAC
GATAGAGAAAAATCCATATGATCTTGTCTATGATGTACGCGGTGTCGGTTTCCACAAAGCAGATACTTTAGCTAAGAATT
TAGGCATAGAATATAACGCCCCTGAACGCTTAAAAGCAGGTCTGCTTTATACGATAGAAGAAGAATGTATTAAACAAGGT
CATACATTTTTACCTAAAGATTATGTATTAGAAACTTCGTTAGAGATGTTAAGCAAGGGATATGACCAAACGATAGATGT
CAGTATGTTAGAAAAAGTGATACTTGAATTGACAGAAGAAAGTAAGTTGGTGGAAGCGGATGAAACACTTTCTATCCCAA
GCTTATATTATTCAGAAGTCAAAAGTGTGCAGAACCTGTATCGTATTGCGTCACATCAAGCTAAATTAGAGAATATTGAA
CAATCTGACTTACAAATCAATATTGGTGAAATCGAGGAAATGAATGGAGTCAACTATGCATCATCTCAAAAAGAAGCACT
TGAAACAGCGATTAATTCAAAAGTCATGCTGCTGACAGGTGGTCCAGGTACCGGTAAAACAACGGTTATCAAAGGCATCG
TTGAACTCTATGCGGAAACGCATGGTTTATCCTTATCCTATGACGATTACCAAGAAGATGATTATCCGATAGCGCTTGCT
GCACCTACAGGACGTGCAGCCAAACGTTTACAAGAATCGACTGGACTTGAAGCAATGACCATCCATCGTTTAATCGGCTG
GAGTCAAGATACCAAGCCTGAAGATGTCTTAGAAAATGAAATTACTGCTAAGCTCATCATTATTGATGAAATGTCAATGG
TAGATACATGGTTGTTTCATCAGTTCTTAAATGCAGTACCGATTGATGCACAAATCATTTTAGTCGGAGATGAAGATCAA
TTACCATCAGTCGGCCCAGGACAAGTGTTTAAAGATTTAATTGATGCGAAAGTCATTCCACGTGTTAATTTAACTGAAGT
CTACCGTCAACAAGATGGTTCTAGTATCATTGAACTCGCACATAAAATGAAATTAGGTCAGCCGATAGACATTACTGAGC
GATTCCACGATCGCAGCTTTATTCCTTGTACAGCTGAACAAATACCAGATGTAGTCAATAAAGTGGTGAGTTCTGCTGTT
AAAAAAGGCTACGATATGAGCGATATTCAAGTCTTGGCTCCGATGTACCGCGGCAGTGCCGGCATTAAGCGTTTGAATAA
AGTATTACAAGATATCTTGAATCCTAAAGCAGAAGATGCAAGAGAGATTGAGTTCGGAGAAGCGGTCTTTAGAAAGGGCG
ACAAAGTCTTACAACTTGTGAATCGTCCTAATGATAATATTTTCAATGGTGATATCGGTGTGATTGTCGGTATATTCTGG
GCACGTGAAAACGAATTAAATAAAGATATACTTGTCGTCGATTTTGAAGGTAATGAAATTACATTTACCAAACAAGATAT
GATGGAGTTAACACATGCTTATTGCACTTCCATTCATAAAGCACAAGGTTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGCATGTTGCAGCGTCCGATTATCTATACAGGACTTACACGTGCCAAACAATCTTTAGTTTTTCTT
GGTGACAGCCAAGCCTTTGACATCGGTATGAAGACCCATGGCCAAGTTCGTATGACGAGACTCGCACAATTGCTTAGAGA
TTACTTCGGTCATGAGGGTGAAACAAATGAGGAACAAGCAGATGAACAAACAAATGATCTAACAACATCAGCACCTGCAC
AACAACTCGTAGAATTAACAGAAGCAACGATTTATGAAATTGACCCGATGATTGGTATGGGTAAGGTCACACCTTATACT
TTTAATCATGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.812

99.378

0.495