Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5I24_RS16080 Genome accession   NZ_CP094679
Coordinates   3302155..3303969 (+) Length   604 a.a.
NCBI ID   WP_006428983.1    Uniprot ID   A6BGT3
Organism   Dorea longicatena strain VE303-06     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3297155..3308969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5I24_RS16055 (K5I24_16055) - 3297252..3297596 (-) 345 WP_006428988.1 hypothetical protein -
  K5I24_RS16060 (K5I24_16060) - 3297809..3298684 (+) 876 WP_173787556.1 DMT family transporter -
  K5I24_RS16065 (K5I24_16065) dtd 3298700..3299146 (+) 447 WP_173787462.1 D-aminoacyl-tRNA deacylase -
  K5I24_RS16070 (K5I24_16070) - 3299333..3299830 (+) 498 WP_243870983.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5I24_RS16075 (K5I24_16075) - 3299877..3302153 (+) 2277 WP_246944986.1 ABC transporter ATP-binding protein -
  K5I24_RS16080 (K5I24_16080) rcrQ 3302155..3303969 (+) 1815 WP_006428983.1 ABC transporter ATP-binding protein Regulator
  K5I24_RS16085 (K5I24_16085) - 3304446..3304703 (-) 258 WP_044920823.1 spore coat protein -
  K5I24_RS16090 (K5I24_16090) - 3304719..3304901 (-) 183 WP_006428981.1 hypothetical protein -
  K5I24_RS16095 (K5I24_16095) - 3305183..3306145 (+) 963 WP_246944990.1 dipeptidase -
  K5I24_RS16100 (K5I24_16100) - 3306201..3307427 (-) 1227 WP_006428979.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67366.86 Da        Isoelectric Point: 7.1144

>NTDB_id=670639 K5I24_RS16080 WP_006428983.1 3302155..3303969(+) (rcrQ) [Dorea longicatena strain VE303-06]
MPRGRGRGPQMSNEKAKDFKGTMKKLMAYLSAYKIGIFFVIVFAIGSTIFNIVGPKILGKATTEIFKGLVRKVSGGSGID
FDKIAHIVLTLLCLYLTSAVFSFVQGYIMTGVSQKLTYRLRKEISEKINRLPMNYFDKQTHGEVLSRITNDVDTLSQSLN
QSATQVITSTTTIIGVLIMMLSISPLMTVVALLILPVSMGLISVIVKRSQKYFMSQQEYLGHVNGQVEEIYGGHNIIKAF
NKEEDVIATFKRDNDILYTSAWKSQFLSGMMMPIMQFVGNLGYVGEVILGGYLAMKGTIQVGDIQSFIQYVRSFTMPIQQ
VAQVANMLQSTAAASERVFEFLEEKEEDQTVENPVCIDKLEGSVSFDHVHFGYNPDHTIINDFSVDVKPGQKVAIVGPTG
AGKTTMIKLLMRFYDVGSGSIKVDGHDVRDFNRDDLRKMFGMVLQDTWLFKGSIEDNIRYGRLDATHEEVVEAAKAARAH
RFIKTLPGGYQMELNEEASNVSQGQKQLLTIARAMLADPKILILDEATSSVDTRTEIQIQKAMDQLMKGRTSFVIAHRLS
TIRDADVILVMKDGDIVEQGNHEELLAQNGFYAELYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=670639 K5I24_RS16080 WP_006428983.1 3302155..3303969(+) (rcrQ) [Dorea longicatena strain VE303-06]
ATGCCAAGAGGTAGAGGACGTGGACCACAGATGTCAAATGAAAAGGCAAAAGATTTTAAAGGCACAATGAAAAAGCTGAT
GGCATATTTGAGCGCATATAAGATTGGAATATTCTTTGTAATCGTATTTGCTATCGGAAGTACGATATTCAATATTGTAG
GACCGAAGATTCTTGGAAAGGCAACGACTGAGATATTTAAAGGACTGGTCAGAAAAGTATCCGGAGGATCCGGAATAGAT
TTTGACAAGATCGCGCATATCGTACTGACGTTGTTATGCCTGTATCTGACAAGTGCGGTATTCTCCTTTGTACAGGGGTA
CATTATGACGGGTGTGTCACAGAAGTTGACGTACCGTCTGAGAAAAGAAATCTCTGAGAAGATCAACCGTCTGCCGATGA
ACTATTTTGATAAGCAGACACATGGTGAAGTATTATCGCGTATTACCAACGATGTAGATACCTTAAGTCAGAGTCTGAAC
CAGAGTGCGACGCAGGTGATCACATCGACGACAACGATCATCGGTGTATTGATCATGATGCTCAGTATCAGCCCGCTGAT
GACCGTGGTAGCACTCCTGATCCTTCCGGTTTCAATGGGACTGATCTCAGTGATCGTGAAACGTTCACAGAAATATTTCA
TGAGTCAGCAGGAATATCTGGGTCATGTAAACGGACAGGTGGAAGAAATCTATGGCGGTCATAATATCATCAAAGCGTTT
AATAAAGAAGAGGATGTAATTGCAACATTCAAGCGTGACAATGATATTCTGTATACATCGGCATGGAAATCGCAGTTCCT
GTCAGGAATGATGATGCCGATCATGCAGTTCGTCGGAAATCTCGGATATGTCGGTGAGGTTATCCTCGGCGGTTACCTTG
CGATGAAAGGTACGATCCAGGTTGGAGATATCCAGTCATTTATTCAGTATGTAAGAAGTTTTACGATGCCGATCCAGCAG
GTTGCACAGGTGGCCAATATGTTACAGTCTACAGCGGCAGCTTCCGAGCGTGTGTTTGAATTCCTTGAGGAGAAGGAAGA
AGACCAGACGGTAGAGAATCCGGTATGTATCGATAAACTGGAAGGAAGCGTAAGCTTCGACCATGTACATTTCGGATATA
ATCCGGATCACACAATCATCAATGACTTCAGTGTGGATGTAAAACCAGGACAGAAGGTTGCAATCGTAGGACCGACCGGT
GCCGGAAAGACGACGATGATCAAATTATTAATGCGTTTCTATGATGTTGGAAGTGGTTCGATCAAAGTAGATGGACATGA
TGTCCGCGACTTTAACCGTGATGACTTAAGAAAAATGTTCGGAATGGTATTACAGGATACTTGGCTGTTCAAGGGAAGCA
TCGAAGATAATATCCGTTATGGACGACTGGATGCAACGCATGAAGAGGTTGTGGAGGCCGCAAAGGCAGCACGTGCACAC
CGCTTTATAAAGACGCTTCCGGGTGGTTATCAGATGGAGTTAAATGAAGAAGCAAGTAACGTATCACAGGGACAGAAACA
GCTCCTGACGATCGCAAGAGCCATGCTGGCAGATCCGAAGATTCTGATTCTTGATGAGGCGACAAGTTCGGTAGATACAA
GAACCGAGATCCAGATCCAGAAGGCGATGGATCAGCTGATGAAAGGAAGAACAAGTTTCGTAATTGCACACCGGCTGTCT
ACGATTCGTGATGCGGATGTGATCCTTGTTATGAAAGACGGGGATATTGTAGAGCAGGGAAATCATGAGGAATTATTAGC
ACAAAATGGATTCTATGCAGAACTGTATAATTCACAATTTGAGAGAAGTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-529)

ABC transporter transmembrane region (ABC_membrane)

(37-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6BGT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

49.661

97.682

0.485