Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ISX51_RS00840 Genome accession   NZ_CP094659
Coordinates   169742..170455 (+) Length   237 a.a.
NCBI ID   WP_281053227.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164742..175455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS00825 (ISX51_00825) - 165768..168098 (+) 2331 WP_281053225.1 Tex family protein -
  ISX51_RS00830 (ISX51_00830) - 168223..168696 (-) 474 WP_017107878.1 hypothetical protein -
  ISX51_RS00835 (ISX51_00835) bioH 168872..169648 (-) 777 WP_281053226.1 pimeloyl-ACP methyl ester esterase BioH -
  ISX51_RS00840 (ISX51_00840) comF 169742..170455 (+) 714 WP_281053227.1 ComF family protein Machinery gene
  ISX51_RS00845 (ISX51_00845) nfuA 170565..171149 (+) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  ISX51_RS00850 (ISX51_00850) nudE 171464..172015 (+) 552 WP_065106065.1 ADP compounds hydrolase NudE -
  ISX51_RS00855 (ISX51_00855) cysQ 172052..172879 (+) 828 WP_017109205.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ISX51_RS00860 (ISX51_00860) - 173014..173793 (-) 780 WP_281053228.1 type II secretion system protein N -
  ISX51_RS00865 (ISX51_00865) - 173795..174283 (-) 489 WP_017086954.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27333.49 Da        Isoelectric Point: 8.6148

>NTDB_id=670459 ISX51_RS00840 WP_281053227.1 169742..170455(+) (comF) [Vibrio lentus strain ED252]
MLSDWLQKHTPRLVTPQCHLCKLDKSPNDAHPRWCNDCLHLFEPRPRCQRCGLKTLTTVEQCGQCLSKPPPWHRLYCVGD
YTFPTAHYIQQMKYSDKFWFARDLSKLLASRIDHPAPLIASVPLHWTRYIQRSFNQSQLLANYTAQELGVKSDVLFRRNR
ATLSQQGLSKSIRLSNLNGAFTLFHRDFEATDYPHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=670459 ISX51_RS00840 WP_281053227.1 169742..170455(+) (comF) [Vibrio lentus strain ED252]
ATGTTATCTGATTGGCTACAAAAACACACACCACGGCTGGTCACACCTCAATGTCACCTGTGTAAATTGGATAAATCCCC
CAATGATGCTCATCCGCGATGGTGTAATGATTGTCTTCATCTCTTCGAGCCAAGGCCGCGCTGCCAGCGGTGTGGCTTAA
AAACACTGACCACTGTCGAGCAATGTGGTCAGTGTTTATCTAAACCTCCACCGTGGCATCGTCTCTATTGTGTGGGCGAT
TACACCTTCCCAACCGCGCACTATATTCAGCAGATGAAGTATTCCGATAAGTTTTGGTTTGCTCGCGATCTGTCGAAGTT
GTTAGCCTCACGCATTGACCATCCAGCCCCGCTAATTGCCAGTGTTCCTTTACATTGGACGCGATACATTCAACGCAGCT
TTAACCAAAGCCAGTTATTGGCGAACTATACCGCTCAAGAATTAGGGGTGAAAAGTGATGTATTGTTTCGGCGAAATCGC
GCCACGCTTTCTCAACAAGGGTTAAGCAAGTCGATAAGGTTGAGTAACCTGAACGGAGCTTTCACGCTTTTTCATCGCGA
CTTTGAAGCGACTGATTATCCTCACATTGCAATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.78

99.578

0.565
  comF Vibrio campbellii strain DS40M4

47.347

100

0.489