Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG946_RS11350 Genome accession   NZ_CP109072
Coordinates   2682037..2684253 (-) Length   738 a.a.
NCBI ID   WP_326796005.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677037..2689253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG946_RS11335 (OG946_11345) - 2679211..2679879 (+) 669 WP_326796003.1 TetR/AcrR family transcriptional regulator -
  OG946_RS11340 (OG946_11350) - 2679978..2680205 (+) 228 WP_326796004.1 heavy-metal-associated domain-containing protein -
  OG946_RS11345 (OG946_11355) - 2680578..2681867 (-) 1290 WP_125934910.1 citrate synthase -
  OG946_RS11350 (OG946_11360) recD/recD2/recDB 2682037..2684253 (-) 2217 WP_326796005.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG946_RS11355 (OG946_11365) - 2684535..2685131 (+) 597 WP_326796006.1 DUF937 domain-containing protein -
  OG946_RS11360 (OG946_11370) - 2685231..2686082 (-) 852 WP_326796007.1 sugar phosphate isomerase/epimerase family protein -
  OG946_RS11365 (OG946_11375) - 2686322..2687542 (+) 1221 WP_326796008.1 IS110 family transposase -
  OG946_RS11370 (OG946_11380) - 2687560..2688735 (-) 1176 WP_326796009.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79477.94 Da        Isoelectric Point: 7.0658

>NTDB_id=670404 OG946_RS11350 WP_326796005.1 2682037..2684253(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01808]
MTQLAVVEGVLERITYANEDNGYTVARVDTGRGGGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYRTVLPA
TVQGIRRYLGSGLIKGIGPRIAERIVDHFGVGTLDVIEQDPARLVEVPGLGPKRTKLIGAAWEEQKAIKEVMLFLQGVGV
STSIAVRIYKSYGDASISVVKNEPYRLAADVWGIGFLTADRIARSVGIPHDSPERVKAGLQYALSQSSDQGNCFLPEQQL
ITEAVKLLQVDTGLVIECLDELVKEEGVVRETVPGPAGEEAVQGIYLVPFHRAEVSLAAQLLRLLRTERDRMPAFQDVDW
DRALSWLGGRTGAELAPEQEQAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVMAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPAVRLTRIFRQARQSGVVTNAHRINSGVQPLTQGLADFFLFAEDDTEAAGRLTVDVAARRVPAKFGLDPRRDVQVLA
PMHRGPAGAGALNGLLQEAVTPGRPGLAEKRFGGRTFRVGDKVTQIRNNYEKGSNGVFNGTVGVVTALDADEQRLTVLTD
EDEEVPYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKALGQAVRTVSA
GRRCTALDHRLRGRVGLP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=670404 OG946_RS11350 WP_326796005.1 2682037..2684253(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01808]
ATGACGCAACTGGCGGTGGTGGAGGGGGTCCTCGAGCGGATCACGTACGCCAACGAGGACAACGGGTACACGGTCGCCCG
CGTCGACACCGGCCGCGGCGGCGGCGATCTGCTCACGGTCGTCGGCGCCCTCCTCGGCGCCCAGCCCGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAACAGTTCACCGTCGAGAATTACCGAACAGTCCTCCCCGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGGCTGATCAAAGGCATCGGCCCCCGCATCGCCGAGCGCATCGTCGA
CCACTTCGGCGTCGGCACCCTCGACGTCATCGAGCAGGATCCCGCCCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GGACGAAGCTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGCTCTTCCTCCAGGGCGTCGGCGTC
TCCACGTCCATCGCCGTGCGGATCTACAAGTCGTACGGGGACGCCTCCATCTCCGTGGTGAAGAACGAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGGATCGCCCGCTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTCAAGGCCGGCCTTCAGTACGCGCTGTCGCAGTCCTCCGACCAGGGCAACTGCTTCCTGCCCGAGCAGCAGCTC
ATCACCGAGGCGGTCAAGCTGCTCCAGGTCGACACGGGCCTGGTCATCGAGTGCCTGGACGAGCTGGTGAAGGAGGAGGG
CGTCGTCCGGGAGACGGTGCCCGGGCCGGCCGGGGAGGAGGCCGTGCAGGGGATCTATCTCGTGCCGTTCCACCGCGCGG
AGGTCTCCCTGGCCGCCCAGTTGCTGCGCCTGCTGCGCACCGAGCGGGACCGGATGCCCGCCTTCCAGGACGTTGACTGG
GACCGGGCGCTGAGCTGGCTCGGCGGTCGCACCGGGGCGGAGCTGGCGCCCGAGCAGGAGCAGGCGGTCCGGCTGGCGCT
GACGGAGAAGGTCGCGGTGCTGACCGGCGGCCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCCC
GGGCCAAGCGGGCGAAGGTGGTGATGGCGGCGCCCACGGGCCGTGCGGCCAAACGGCTTGCGGAGCTGACCGGAGCCGAG
GCGTCCACGGTCCACCGGCTGCTGGAGCTCAAGCCGGGCGGCGACGCCGCGTACGACAGGGACCGCCCGCTCGACGCCGA
CCTGGTCGTGGTCGACGAAGCCTCGATGCTCGACCTGCTGCTGGCGAACAAGCTGGCCAAGGCCGTGCCGCCGGGGGCGC
ACCTGCTGCTTGTCGGCGACGTCGACCAACTGCCGTCCGTCGGTGCCGGGGAGGTGCTGCGCGACCTGCTGGCCGACGGC
GGCCCGGTGCCCGCGGTCCGGCTGACCCGGATCTTCCGCCAGGCCCGGCAGTCCGGCGTGGTGACGAACGCGCACCGCAT
CAACTCCGGGGTGCAGCCCCTCACCCAGGGCCTCGCCGACTTCTTCCTCTTCGCCGAGGACGACACGGAGGCCGCCGGCC
GGCTCACGGTGGATGTGGCGGCACGTCGGGTTCCGGCCAAGTTCGGCCTCGACCCGCGCCGCGACGTGCAGGTCCTCGCT
CCCATGCACCGCGGCCCCGCGGGCGCCGGCGCGCTCAACGGGCTGCTCCAGGAGGCCGTCACCCCCGGCCGCCCCGGGCT
GGCCGAGAAGCGCTTCGGCGGCCGTACGTTCCGCGTCGGCGACAAGGTCACGCAGATACGGAACAACTACGAGAAGGGCA
GCAACGGGGTCTTCAACGGCACCGTCGGCGTCGTCACCGCCCTGGACGCCGACGAGCAGCGGCTGACGGTGCTCACGGAC
GAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGACGCACGCGTACGCCGTCACCATCCACCGTTCGCA
GGGCAGCGAGTATCCGGCGGTGGTGATCCCCGTCACCACCGGCGCCTGGATGATGCTCCAACGGAACCTGCTGTACACGG
CCGTCACCCGGGCCAAGAAGCTGGTCGTGCTGGTCGGCTCCCGCAAGGCCCTGGGTCAGGCGGTGCGGACCGTTTCCGCA
GGCCGGCGTTGTACGGCGCTGGATCATCGGCTGCGTGGGCGAGTGGGTCTCCCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)

AAA domain (AAA_30)

(334-513)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.456

100

0.36