Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MOJ78_RS14450 Genome accession   NZ_CP094656
Coordinates   2815962..2818322 (-) Length   786 a.a.
NCBI ID   WP_304978040.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. AL-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2810962..2823322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOJ78_RS14430 (MOJ78_14400) - 2812187..2812360 (-) 174 WP_304978036.1 RNA polymerase subunit sigma-70 -
  MOJ78_RS14435 (MOJ78_14405) dtd 2812490..2812933 (-) 444 WP_304978037.1 D-aminoacyl-tRNA deacylase -
  MOJ78_RS14440 (MOJ78_14410) - 2812989..2815142 (-) 2154 WP_370529817.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MOJ78_RS14445 (MOJ78_14415) - 2815446..2815958 (-) 513 WP_304978039.1 adenine phosphoribosyltransferase -
  MOJ78_RS14450 (MOJ78_14420) recJ 2815962..2818322 (-) 2361 WP_304978040.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MOJ78_RS14455 (MOJ78_14425) - 2818396..2818749 (-) 354 WP_304978041.1 lipopolysaccharide assembly LapA domain-containing protein -
  MOJ78_RS14460 (MOJ78_14430) secDF 2818889..2821141 (-) 2253 WP_304978042.1 protein translocase subunit SecDF -
  MOJ78_RS14465 (MOJ78_14435) - 2821268..2821546 (-) 279 WP_304978043.1 post-transcriptional regulator -
  MOJ78_RS14470 (MOJ78_14440) spoVB 2821719..2823266 (+) 1548 WP_304978044.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89525.78 Da        Isoelectric Point: 4.8086

>NTDB_id=670396 MOJ78_RS14450 WP_304978040.1 2815962..2818322(-) (recJ) [Alkalihalobacillus sp. AL-G]
MLKAKTRWKLTEADEVKSKELIQKHDISPLLARLFVSRGIHEETEINQFLHIEDTMFYDPFLLDDMKKAVERIKYAIEQD
EKILIFGDYDADGVSSTSVMIHTFRELGARFDFYIPNRFTEGYGPNEAAFRWAKDEGYSLIVTVDTGISATHEADVAMEL
GIDLIITDHHEPPPELPNAFATINPKKPGCPYPFKGLAGVGVAFKVAHALLDEAPIHLLDIACIGTIADLVPLVDENRLI
AKLGIQKLQSTSKPGLQALLKVCGISDQQLNSEHVGFAIGPRVNAAGRLDSAEPAVELFTTDDVEQAQWIAEEIDGMNKE
RKTIVNEMSKEAIELIEEQYPPEDNSVLVIAKEGWNPGVIGIVASRVVERYYRPTIILSIDEEKGEAKGSARSIAGFDMF
ESLSTCRDILPHFGGHPMAAGMTLKVENLEELRNRLNELASSNLSKEDFTPITKVDVSCSVDDISLDVIEELQMLEPFGV
ENPKPKFMIDQCQLKEIRRIGSESNHLKLALNGNQSTLDVIGFHFGEVFEEITPNAAISVVGELSINEWNGFRKPQVMLQ
DIAVKEKQLFDYRGIKNLSKRLSLIPRDKVLLLHYRDETIEKLELHDWKDRIQKIDNLTSDKAILDTKYMFVLDLPSSKG
HLEHLISLGSYADRVYTVFHHNEDHYFNPIPTRDQFKWFYAFLNKKQPFEYRKRAKDLASYKGWTPESVIFMTEVFFELE
FVTIENGFVTVSDQPQKRPLTDSETYRRKQEQASLENDLCYSSYRELKKWFFEENDNESKRFEEAN

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=670396 MOJ78_RS14450 WP_304978040.1 2815962..2818322(-) (recJ) [Alkalihalobacillus sp. AL-G]
ATGTTAAAAGCAAAGACAAGATGGAAGCTGACAGAAGCAGATGAGGTAAAATCAAAGGAGCTTATACAAAAACATGACAT
TTCTCCTTTACTCGCCCGTTTATTTGTCAGTCGAGGTATACATGAGGAAACGGAAATTAATCAGTTTTTACATATTGAGG
ATACAATGTTTTACGATCCTTTTCTGTTAGATGATATGAAAAAAGCGGTCGAACGGATTAAGTACGCTATTGAGCAGGAT
GAGAAAATTCTGATTTTTGGGGATTATGATGCAGATGGTGTAAGTAGTACATCCGTTATGATCCATACATTTCGAGAGCT
CGGTGCGCGATTTGACTTCTATATCCCGAACCGATTTACCGAGGGGTATGGTCCAAATGAAGCTGCTTTTCGCTGGGCTA
AGGACGAGGGGTACTCCTTGATTGTGACGGTCGATACAGGTATTTCAGCAACCCACGAGGCAGATGTCGCCATGGAATTG
GGGATTGATCTGATTATTACAGATCACCATGAACCTCCACCGGAATTACCGAATGCTTTTGCGACAATCAACCCGAAGAA
ACCAGGCTGTCCGTATCCATTTAAAGGACTTGCGGGAGTTGGAGTTGCTTTTAAAGTTGCCCATGCATTATTAGATGAAG
CGCCTATTCATCTTCTCGATATCGCATGTATCGGTACAATTGCAGACTTAGTTCCACTAGTTGATGAAAATCGGTTGATT
GCAAAGCTCGGAATACAAAAGCTCCAATCAACTTCAAAACCAGGACTTCAAGCATTATTGAAGGTATGTGGCATTTCGGA
TCAACAGTTAAACTCAGAGCATGTCGGATTTGCGATCGGACCTCGAGTCAATGCAGCAGGACGATTAGATTCTGCTGAAC
CGGCGGTCGAATTATTCACGACTGATGATGTTGAACAAGCACAATGGATTGCAGAAGAAATCGATGGAATGAATAAAGAG
CGGAAAACGATTGTCAATGAAATGTCGAAAGAAGCGATCGAACTAATTGAAGAACAGTACCCACCTGAAGATAATTCCGT
TCTCGTCATCGCCAAGGAAGGCTGGAATCCTGGCGTAATCGGAATTGTTGCATCGAGGGTAGTTGAACGGTATTACAGAC
CAACGATCATTTTGAGTATTGATGAGGAAAAGGGCGAGGCGAAGGGCTCTGCAAGAAGCATCGCTGGGTTCGATATGTTC
GAAAGCTTATCAACATGCAGAGATATACTGCCTCATTTTGGCGGCCATCCGATGGCAGCAGGGATGACATTAAAGGTTGA
AAACCTTGAGGAATTACGTAATCGTTTGAATGAGCTCGCATCAAGCAACCTCTCAAAAGAGGATTTTACACCGATAACAA
AAGTTGATGTCAGCTGTTCTGTCGATGATATCTCGTTGGATGTGATTGAAGAATTACAAATGCTTGAACCATTTGGGGTC
GAGAACCCAAAGCCGAAATTCATGATCGATCAGTGCCAACTAAAGGAAATACGGAGAATCGGCAGCGAATCCAATCATCT
GAAACTAGCATTAAATGGTAATCAATCTACGCTTGACGTGATCGGTTTTCATTTTGGAGAAGTGTTTGAAGAGATTACAC
CGAATGCTGCTATTTCAGTAGTTGGTGAGCTTTCTATCAATGAATGGAACGGGTTCCGCAAACCTCAGGTGATGCTGCAG
GACATTGCTGTCAAAGAAAAACAACTGTTTGATTATCGCGGTATCAAAAATTTATCAAAACGTTTAAGCCTGATCCCACG
CGACAAGGTTCTTCTTTTACACTATAGGGACGAAACGATTGAAAAATTGGAGCTGCATGATTGGAAGGATCGAATACAGA
AGATTGATAATCTTACGTCCGACAAGGCTATTTTAGATACTAAGTATATGTTTGTCTTGGATTTACCGTCGAGCAAGGGG
CACTTAGAACATTTGATTTCGTTAGGCAGCTATGCAGATCGCGTTTACACTGTCTTTCATCATAATGAGGATCATTACTT
TAATCCGATTCCAACACGAGACCAATTCAAATGGTTTTATGCTTTTTTAAATAAGAAACAACCGTTCGAATATCGTAAAC
GAGCAAAGGACCTAGCGTCCTATAAAGGCTGGACACCTGAATCGGTCATTTTTATGACAGAGGTGTTTTTTGAACTTGAA
TTTGTTACAATAGAGAATGGATTTGTAACAGTATCTGATCAACCACAAAAGCGACCGTTGACTGATTCGGAAACGTATAG
GAGAAAACAAGAACAGGCCAGTCTCGAAAATGATTTATGTTACTCCTCATACCGTGAGTTGAAAAAGTGGTTTTTTGAAG
AAAATGATAATGAAAGCAAACGTTTTGAGGAGGCTAACTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.041

99.746

0.519