Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MTX16_RS06195 Genome accession   NZ_CP094624
Coordinates   1250319..1251098 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain LX43     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245319..1256098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS06170 uppS 1246068..1246844 (-) 777 WP_061457651.1 isoprenyl transferase -
  MTX16_RS06175 frr 1246930..1247487 (-) 558 WP_000531501.1 ribosome recycling factor -
  MTX16_RS06180 pyrH 1247490..1248212 (-) 723 WP_000042668.1 UMP kinase -
  MTX16_RS06185 tsf 1248279..1249166 (-) 888 WP_001018578.1 translation elongation factor Ts -
  MTX16_RS06190 rpsB 1249270..1249971 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  MTX16_RS06195 codY 1250319..1251098 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MTX16_RS06200 hslU 1251176..1252567 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  MTX16_RS06205 hslV 1252590..1253132 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  MTX16_RS06210 xerC 1253175..1254074 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  MTX16_RS06215 trmFO 1254140..1255444 (-) 1305 WP_061457652.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=670256 MTX16_RS06195 WP_000421290.1 1250319..1251098(-) (codY) [Bacillus thuringiensis strain LX43]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=670256 MTX16_RS06195 WP_000421290.1 1250319..1251098(-) (codY) [Bacillus thuringiensis strain LX43]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459