Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTO68_RS01750 Genome accession   NZ_CP094620
Coordinates   374047..374475 (+) Length   142 a.a.
NCBI ID   WP_244014772.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369047..379475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS01740 (MTO68_01740) - 369590..373516 (+) 3927 WP_244014770.1 PilC/PilY family type IV pilus protein -
  MTO68_RS01745 (MTO68_01745) - 373500..374042 (+) 543 WP_279578601.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MTO68_RS01750 (MTO68_01750) comF 374047..374475 (+) 429 WP_244014772.1 type IV pilin protein Machinery gene
  MTO68_RS01755 (MTO68_01755) rpsP 374621..374878 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  MTO68_RS01760 (MTO68_01760) rimM 374906..375454 (+) 549 WP_004718282.1 ribosome maturation factor RimM -
  MTO68_RS01765 (MTO68_01765) trmD 375497..376237 (+) 741 WP_244014774.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MTO68_RS01770 (MTO68_01770) rplS 376510..376881 (+) 372 WP_004718278.1 50S ribosomal protein L19 -
  MTO68_RS01775 (MTO68_01775) - 376952..377920 (-) 969 WP_244014776.1 triacylglycerol lipase -
  MTO68_RS01780 (MTO68_01780) - 378184..379158 (-) 975 WP_244014777.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15518.56 Da        Isoelectric Point: 6.3129

>NTDB_id=670222 MTO68_RS01750 WP_244014772.1 374047..374475(+) (comF) [Acinetobacter sp. NyZ410]
MKQKGFTLVELLIVVAIIGILAAIAYPSYQEYIVRTNRVDAQSEMLQIARNLSNYKMAKGTFKDAKLENGAFEEDYPSTG
TAKYKVKLEIPTDNLTWSLTATPISGSQQDGNGDVGLDSQGQKCWSKGTTCTPSATTNWDGK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=670222 MTO68_RS01750 WP_244014772.1 374047..374475(+) (comF) [Acinetobacter sp. NyZ410]
ATGAAGCAGAAAGGATTTACATTAGTTGAGTTATTAATTGTTGTGGCAATTATAGGAATTTTAGCTGCAATAGCCTATCC
GTCATATCAAGAATATATTGTTCGAACAAACCGAGTTGATGCACAAAGCGAGATGCTTCAAATTGCCCGAAATTTATCCA
ATTATAAAATGGCGAAAGGAACATTTAAAGACGCCAAATTGGAAAATGGAGCATTTGAAGAAGATTATCCAAGTACTGGA
ACGGCAAAATACAAAGTTAAGTTAGAAATTCCTACAGATAATTTAACATGGTCTTTAACGGCGACACCAATTTCTGGTTC
ACAACAAGATGGAAATGGTGATGTCGGATTAGATAGCCAAGGCCAAAAATGTTGGAGCAAAGGTACCACTTGCACCCCAT
CAGCAACCACAAACTGGGACGGCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

51.064

99.296

0.507
  pilE Acinetobacter baumannii D1279779

43.885

97.887

0.43