Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG826_RS28050 Genome accession   NZ_CP109041
Coordinates   6270925..6273180 (+) Length   751 a.a.
NCBI ID   WP_266758973.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6265925..6278180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS28030 (OG826_28035) - 6266180..6267229 (-) 1050 WP_266758980.1 LacI family DNA-binding transcriptional regulator -
  OG826_RS28035 (OG826_28040) - 6267538..6268689 (+) 1152 WP_266758979.1 Gfo/Idh/MocA family protein -
  OG826_RS28040 (OG826_28045) - 6268686..6269843 (+) 1158 WP_266758977.1 dihydrodipicolinate synthase family protein -
  OG826_RS28045 (OG826_28050) - 6269840..6270670 (+) 831 WP_266758975.1 sugar phosphate isomerase/epimerase -
  OG826_RS28050 (OG826_28055) recD/recD2/recDB 6270925..6273180 (+) 2256 WP_266758973.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG826_RS28055 (OG826_28060) - 6273475..6274764 (+) 1290 WP_266758971.1 citrate synthase -
  OG826_RS28060 (OG826_28065) - 6275348..6277591 (-) 2244 WP_266758969.1 cation-translocating P-type ATPase -
  OG826_RS28065 (OG826_28070) - 6277683..6277922 (-) 240 WP_266758967.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81202.73 Da        Isoelectric Point: 7.0118

>NTDB_id=670174 OG826_RS28050 WP_266758973.1 6270925..6273180(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00645]
MSNQAGAAQTGERRLATLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIARSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEERLIADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPAPDGGDPVTAVYLVPFHRAELSLSAQLVR
LLRSDRDRMPGFHDVAWDKALAWLKGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKGAKVVLS
APTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTKVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDAVEQRLTVRTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGS

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=670174 OG826_RS28050 WP_266758973.1 6270925..6273180(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00645]
ATGTCCAATCAGGCGGGGGCCGCCCAGACCGGCGAGCGGCGACTGGCCACGCTGGAAGGCGTGCTCGAACGCATCACGTA
CGCCAACGAGGAGAACGGATACACGGTCGCCCGGGTGGACACCGGCCGCGGCGCCGGCGATCTGCTCACCGTCGTCGGAT
CGCTTCTCGGAGCCCAGGTCGGCGAGTCCCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCGGCCACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGCCCGGTCTTCGCCGACCGCATCACCCAGCACTTCGGACTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCGGGACTCGGCCCCAAGCGCACCGGGAGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCGGTCGTGAAGAACCAGCCCTACCGCCTGGCATCCGACGTCTGGGGCATCGGCTTCCTCACAGCCGACAAGATCG
CCCGGTCCGTCGGCATCCCGCACGACAGCCCGGAGCGCGTGAAGGCCGGCCTTCAGTACGCCCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTACCTCCCCGAGGAGCGGCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACGGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCCCCGGCGGAAGAGGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTCCCCGCTCCGG
ACGGCGGAGACCCGGTGACGGCCGTCTACCTGGTGCCCTTCCACCGCGCGGAACTCTCGCTCTCCGCCCAGCTGGTGCGC
CTGCTGCGCAGCGACCGTGACCGGATGCCCGGCTTCCACGACGTGGCCTGGGACAAGGCCCTGGCGTGGCTGAAGGGGCG
TACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCGGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGAG
GTCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAACTGGCCCGCGCCAAGGGGGCCAAGGTGGTCCTCTCC
GCGCCCACCGGCCGTGCCGCCAAGCGGCTCGCCGAGCTGACCGGAGCCGAGGCCTCCACGGTGCACCGGCTCCTGGAGCT
CAAGCCGGGCGGTGACGCGGCCTATGACAAGGACCGGCCGCTGGACGCCGACCTGGTGGTGGTCGACGAGGCCTCCATGC
TCGACCTCCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGCGCCCATCTGCTCTTCGTCGGCGACGTCGACCAG
CTGCCGAGCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGCCGACCGCGGCCCGGTCCCGGCGGTCCGCCTCACCAA
GGTCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTGACCGACG
GCATGAAGGACTTCTTCCTGTTCGTCGAGGACGACACCGAGGAGGCCGGGCGGCTCACCGTGGACGTGGCGGCCCGGCGG
ATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGGGACATCCAGGTCCTCGCTCCCATGCACCGGGGCCCGGCCGGCGCGGG
CCACCTCAACGGCCTGCTCCAGCAGGCCATCACCCCCGGCCGTCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGGGTCT
TCCGGGTCGGGGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACCGTGGGC
GTCGTCACCTCGCTCGATGCGGTCGAGCAGCGTCTGACGGTGCGGACGGACGAGGACGAGGAGGTGCCGTACGAATTCGA
CGAACTCGACGAGCTCGCCCACGCCTACGCGGTGACCATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCC
CGGTGACCACGGGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATAGGCCAGGCGGTGCGTACGGTGTCCGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTGTCCGGCTCATGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix domain (HHH_5)

(105-154)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.789

100

0.362