Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   MST17_RS10105 Genome accession   NZ_CP094545
Coordinates   2031615..2032244 (-) Length   209 a.a.
NCBI ID   WP_111885090.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026615..2037244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS10075 (MST17_10060) - 2027016..2027447 (-) 432 WP_180026946.1 SRPBCC family protein -
  MST17_RS10080 (MST17_10065) tadA 2027474..2028025 (-) 552 WP_180026945.1 tRNA adenosine(34) deaminase TadA -
  MST17_RS10085 (MST17_10070) - 2028033..2029154 (-) 1122 WP_180026944.1 enoyl-CoA hydratase/isomerase family protein -
  MST17_RS10090 (MST17_10075) ung 2029151..2029864 (-) 714 WP_180026951.1 uracil-DNA glycosylase -
  MST17_RS10095 (MST17_10080) - 2029901..2030497 (-) 597 WP_180007335.1 6-carboxytetrahydropterin synthase -
  MST17_RS10100 (MST17_10085) gspK 2030628..2031575 (-) 948 WP_180026943.1 type II secretion system minor pseudopilin GspK -
  MST17_RS10105 (MST17_10090) xcpW 2031615..2032244 (-) 630 WP_111885090.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MST17_RS10110 (MST17_10095) xcpV 2032291..2032683 (-) 393 WP_078188947.1 type II secretion system minor pseudopilin GspI Machinery gene
  MST17_RS10115 (MST17_10100) - 2032673..2033230 (-) 558 WP_180010304.1 type II secretion system protein -
  MST17_RS10120 (MST17_10105) - 2033240..2033854 (-) 615 WP_168378896.1 TetR/AcrR family transcriptional regulator -
  MST17_RS10125 (MST17_10110) - 2033897..2034670 (-) 774 WP_168378895.1 TatD family hydrolase -
  MST17_RS10130 (MST17_10115) - 2034702..2035043 (-) 342 WP_111885061.1 PilZ domain-containing protein -
  MST17_RS10135 (MST17_10120) - 2035059..2036042 (-) 984 WP_180010303.1 DNA polymerase III subunit delta' -
  MST17_RS10140 (MST17_10125) kdsB 2036056..2036817 (-) 762 WP_180026942.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23668.81 Da        Isoelectric Point: 5.3202

>NTDB_id=670140 MST17_RS10105 WP_111885090.1 2031615..2032244(-) (xcpW) [Acinetobacter sp. YH16056_T]
MKNQAGFTLVELLVAIAIFAVLSALGWKVFDYVSKVKERNATHEARLSQLQDAHQQILRDTVQAVPLTANINGDIQPALV
LQNGRFNFSKTGVTDPLNQGIAPDERVEYQYKADEKKLYRLKFKNLNQTGHDQPDSSVLLDNVEQYKITVLNPNELENWP
DAAADLNNEKTIQLLPRGIRMQLTVDGTNYEWLFSLLNTDFLLDKNKNG

Nucleotide


Download         Length: 630 bp        

>NTDB_id=670140 MST17_RS10105 WP_111885090.1 2031615..2032244(-) (xcpW) [Acinetobacter sp. YH16056_T]
ATGAAGAATCAAGCAGGATTTACCTTAGTTGAGCTTTTGGTTGCGATTGCTATTTTCGCAGTGCTGTCTGCTTTGGGTTG
GAAGGTTTTTGATTATGTCTCGAAAGTGAAGGAACGAAACGCAACCCATGAGGCAAGGCTTAGTCAGTTGCAAGATGCCC
ATCAGCAAATTCTCAGAGACACAGTACAAGCTGTGCCCTTAACTGCCAATATTAATGGAGATATTCAACCAGCGTTAGTA
TTGCAAAATGGCCGATTTAATTTCAGTAAGACAGGTGTCACTGATCCATTAAATCAGGGCATTGCACCTGACGAGCGAGT
GGAATATCAATACAAAGCTGATGAAAAAAAATTGTATCGGCTAAAATTTAAAAATCTCAACCAAACGGGGCATGATCAGC
CAGATTCGAGTGTTTTACTGGATAATGTTGAACAATATAAAATCACGGTACTCAATCCAAATGAGTTAGAGAATTGGCCA
GATGCTGCCGCTGATTTGAATAATGAAAAAACCATACAACTGTTACCGCGGGGTATCAGGATGCAGCTCACAGTTGATGG
GACAAACTACGAATGGTTATTCAGTTTGTTAAATACTGATTTTTTATTGGATAAAAATAAGAATGGTTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

57.561

98.086

0.565