Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   MST16_RS10215 Genome accession   NZ_CP094541
Coordinates   2077667..2078296 (-) Length   209 a.a.
NCBI ID   WP_180003180.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2072667..2083296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS10185 (MST16_10165) - 2073068..2073499 (-) 432 WP_180010308.1 SRPBCC family protein -
  MST16_RS10190 (MST16_10170) tadA 2073526..2074077 (-) 552 WP_111885055.1 tRNA adenosine(34) deaminase TadA -
  MST16_RS10195 (MST16_10175) - 2074085..2075206 (-) 1122 WP_180010307.1 enoyl-CoA hydratase/isomerase family protein -
  MST16_RS10200 (MST16_10180) ung 2075203..2075916 (-) 714 WP_078193660.1 uracil-DNA glycosylase -
  MST16_RS10205 (MST16_10185) - 2075953..2076549 (-) 597 WP_180010306.1 6-carboxytetrahydropterin synthase -
  MST16_RS10210 (MST16_10190) gspK 2076680..2077627 (-) 948 WP_180010305.1 type II secretion system minor pseudopilin GspK -
  MST16_RS10215 (MST16_10195) xcpW 2077667..2078296 (-) 630 WP_180003180.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MST16_RS10220 (MST16_10200) xcpV 2078343..2078735 (-) 393 WP_078188947.1 type II secretion system minor pseudopilin GspI Machinery gene
  MST16_RS10225 (MST16_10205) - 2078725..2079282 (-) 558 WP_180010304.1 type II secretion system protein -
  MST16_RS10230 (MST16_10210) - 2079292..2079906 (-) 615 WP_168378896.1 TetR/AcrR family transcriptional regulator -
  MST16_RS10235 (MST16_10215) - 2079949..2080722 (-) 774 WP_168378895.1 TatD family hydrolase -
  MST16_RS10240 (MST16_10220) - 2080754..2081095 (-) 342 WP_111885061.1 PilZ domain-containing protein -
  MST16_RS10245 (MST16_10225) - 2081111..2082094 (-) 984 WP_180010303.1 DNA polymerase III subunit delta' -
  MST16_RS10250 (MST16_10230) kdsB 2082108..2082869 (-) 762 WP_180010302.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23676.80 Da        Isoelectric Point: 5.0627

>NTDB_id=670091 MST16_RS10215 WP_180003180.1 2077667..2078296(-) (xcpW) [Acinetobacter sp. YH16040_T]
MKNQAGFTLVELLVAIAIFAVLSALGWKVFDYVSKVKERNATHEARLSQLQDAHQQILRDTVQAVPLTANINGDIQPALV
LQNGRFNFSKTGVTDPLNQGIAPDERVEYQYKADEKKLYRLKFKNLNQTGHDQPDSSVLLDNIEQYKITVLNPNELDSWP
DSAADMNNEKTIQLLPRGIRMQLTVDGTDYEWLFSLLNTDFLLDKNKNG

Nucleotide


Download         Length: 630 bp        

>NTDB_id=670091 MST16_RS10215 WP_180003180.1 2077667..2078296(-) (xcpW) [Acinetobacter sp. YH16040_T]
ATGAAGAATCAAGCAGGATTTACCTTAGTTGAGCTTTTGGTTGCGATTGCTATTTTCGCAGTGCTGTCTGCTTTGGGTTG
GAAGGTTTTTGATTATGTCTCGAAAGTGAAGGAACGAAACGCAACCCATGAGGCAAGGCTGAGTCAGTTGCAAGATGCCC
ATCAGCAAATTCTCAGAGACACAGTACAAGCTGTGCCCTTAACTGCCAATATTAATGGAGATATTCAACCAGCGTTAGTA
TTGCAAAATGGCCGATTTAATTTCAGTAAGACAGGTGTCACTGATCCATTAAATCAGGGCATTGCACCTGACGAGCGAGT
GGAATATCAATACAAAGCTGATGAAAAAAAATTGTATCGGCTAAAATTTAAAAATCTCAACCAAACGGGGCATGATCAGC
CAGATTCGAGTGTTTTACTGGATAATATTGAACAATATAAAATCACGGTACTCAATCCAAATGAGTTGGACAGTTGGCCA
GATTCAGCTGCAGATATGAATAATGAAAAAACCATACAACTGTTACCACGCGGTATCAGGATGCAACTCACAGTCGATGG
GACAGACTATGAATGGCTATTCAGTTTGTTAAATACTGATTTTTTATTGGATAAAAATAAGAATGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

56.585

98.086

0.555