Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG788_RS17965 Genome accession   NZ_CP109040
Coordinates   4109550..4111805 (-) Length   751 a.a.
NCBI ID   WP_351553089.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4104550..4116805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS17950 (OG788_17985) - 4104763..4105002 (+) 240 WP_406371989.1 heavy-metal-associated domain-containing protein -
  OG788_RS17955 (OG788_17990) - 4105095..4107338 (+) 2244 WP_406371991.1 heavy metal translocating P-type ATPase -
  OG788_RS17960 (OG788_17995) - 4107966..4109255 (-) 1290 WP_351553092.1 citrate synthase -
  OG788_RS17965 (OG788_18000) recD/recD2/recDB 4109550..4111805 (-) 2256 WP_351553089.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG788_RS17970 (OG788_18005) - 4112226..4113446 (+) 1221 WP_406371994.1 esterase/lipase family protein -
  OG788_RS17975 (OG788_18010) - 4113555..4114388 (-) 834 WP_406371996.1 sugar phosphate isomerase/epimerase family protein -
  OG788_RS17980 (OG788_18015) - 4114385..4115542 (-) 1158 WP_406371998.1 dihydrodipicolinate synthase family protein -
  OG788_RS17985 (OG788_18020) - 4115539..4116690 (-) 1152 WP_351542112.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81146.63 Da        Isoelectric Point: 6.8732

>NTDB_id=670063 OG788_RS17965 WP_351553089.1 4109550..4111805(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00647]
MSNQAGAAQTGERRLATLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEERLIADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPGADGGDPVTAVYLVPFHRAELSLSAQLLR
LLRSDRDRMPGFHDVAWDKALAWLKGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKGAKVVLA
APTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDAVEQRLTVRTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGS

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=670063 OG788_RS17965 WP_351553089.1 4109550..4111805(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00647]
ATGTCCAATCAGGCGGGGGCCGCCCAGACCGGCGAGCGGCGACTGGCCACGCTGGAAGGCGTGCTCGAACGGATCACGTA
CGCCAACGAGGAGAACGGATACACGGTCGCCCGGGTGGACACCGGCCGGGGCGCCGGCGATCTGCTCACCGTCGTCGGAT
CGCTTCTCGGCGCCCAGGTCGGCGAGTCGCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCGGCCACCGTCCAGGGCATCCGCCGCTATCTCGGTTCCGGCCTGGTCAAGGG
CATCGGCCCGGTCTTCGCCGACCGCATCACCCAGCACTTCGGACTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCGGGGCTCGGCCCCAAGCGCACCGGGAGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCGGTCCGTATCTACAAGAAGTACGGCGACGCGTC
GATCTCGGTCGTGAAGAACCAGCCCTACCGCCTGGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCCGTCGGCATCCCGCACGACAGCCCGGAGCGCGTGAAGGCCGGCCTTCAGTACGCCCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTACCTCCCCGAGGAGCGGCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACGGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCGCCGGCGGAAGAGGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTCCCCGGCGCGG
ACGGCGGCGACCCGGTGACGGCCGTCTACCTGGTGCCCTTCCACCGCGCGGAACTCTCGCTCTCCGCGCAGCTGCTGCGC
CTGCTGCGCAGCGACCGGGACCGGATGCCCGGCTTCCACGACGTGGCCTGGGACAAGGCCCTGGCCTGGCTGAAGGGGCG
CACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCGGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGAG
GTCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCCCGCGCCAAGGGGGCCAAGGTGGTCCTCGCC
GCGCCCACCGGCCGTGCCGCCAAGCGGCTCGCCGAGCTGACCGGAGCCGAGGCCTCCACCGTGCACCGGCTGCTGGAGCT
CAAGCCGGGCGGTGACGCGGCCTATGACAAGGACCGGCCGCTGGACGCCGACCTGGTGGTGGTCGACGAGGCCTCCATGC
TCGACCTCCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGTGCCCATCTGCTCTTCGTCGGCGACGTCGACCAA
CTGCCGAGCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGCCGACCGCGGCCCGGTCCCGGCGGTCCGCCTCACCCG
GGTCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCGGTCACCGACG
GCATGAAGGACTTCTTCCTGTTCGTCGAGGACGACACCGAGGAGGCGGGGCGGCTCACCGTGGACGTGGCGGCCCGGCGG
ATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGGGACATCCAGGTCCTCGCTCCCATGCACCGGGGCCCGGCCGGCGCGGG
CCACCTCAACGGCCTGCTCCAGCAGGCCATCACCCCCGGCCGCCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGGGTCT
TCCGGGTCGGGGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACCGTGGGC
GTCGTCACCTCGCTCGATGCGGTCGAGCAGCGTCTGACGGTGCGGACGGACGAGGACGAGGAGGTGCCGTACGAATTCGA
CGAACTCGACGAGCTCGCCCACGCCTACGCGGTGACCATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCC
CGGTGACCACGGGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCCATAGGCCAGGCGGTGCGTACGGTGTCCGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTGTCCGGCTCATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(105-154)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.658

100

0.361