Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTP08_RS04015 Genome accession   NZ_CP094529
Coordinates   866972..867625 (+) Length   217 a.a.
NCBI ID   WP_243577147.1    Uniprot ID   -
Organism   Chryseobacterium oryzae strain ADR-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861972..872625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP08_RS03985 (MTP08_03985) - 862005..863123 (+) 1119 WP_243577142.1 DNA polymerase III subunit delta' -
  MTP08_RS03995 (MTP08_03995) - 863650..864693 (+) 1044 WP_243577143.1 AMP-binding protein -
  MTP08_RS04000 (MTP08_04000) arfB 864726..865118 (+) 393 WP_243577144.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  MTP08_RS04005 (MTP08_04005) - 865165..865836 (+) 672 WP_243577145.1 hypothetical protein -
  MTP08_RS04010 (MTP08_04010) - 865867..866841 (+) 975 WP_243577146.1 deoxyhypusine synthase family protein -
  MTP08_RS04015 (MTP08_04015) comF 866972..867625 (+) 654 WP_243577147.1 ComF family protein Machinery gene
  MTP08_RS04020 (MTP08_04020) upp 867660..868313 (-) 654 WP_209391289.1 uracil phosphoribosyltransferase -
  MTP08_RS04025 (MTP08_04025) der 868458..869768 (-) 1311 WP_209391290.1 ribosome biogenesis GTPase Der -
  MTP08_RS04030 (MTP08_04030) - 870179..871597 (+) 1419 WP_243577148.1 L-serine ammonia-lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25495.43 Da        Isoelectric Point: 8.0646

>NTDB_id=670033 MTP08_RS04015 WP_243577147.1 866972..867625(+) (comF) [Chryseobacterium oryzae strain ADR-1]
MILDILFPNRCIECSSIIESDLIVCGNCMDQVHFTHQDYFADNFVKQKCRLLFPVENAFALMKFEKQDVSRKIIHELKYR
SREIIGKNLAEWTINSLDFKNERPDLFVTVPLHPKKLSERGYNQLHLFTRVLSDFYNIPYDNELLRRNHYSKAQALKNKR
NRLNTEHTFSVTKDVSEKHILLIDDVFTTGNTLATIAWEILRKGNNKLSILVMAMDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=670033 MTP08_RS04015 WP_243577147.1 866972..867625(+) (comF) [Chryseobacterium oryzae strain ADR-1]
ATGATACTGGATATTTTATTTCCCAACCGCTGTATAGAGTGCAGTTCTATTATAGAAAGTGATTTAATTGTTTGTGGTAA
TTGCATGGACCAGGTTCATTTTACCCATCAAGATTATTTCGCAGATAATTTTGTAAAACAAAAATGCAGACTTCTTTTTC
CTGTTGAAAATGCTTTTGCTCTGATGAAATTTGAAAAGCAAGATGTCAGCAGAAAAATCATTCATGAATTGAAATACAGA
AGCCGAGAAATTATCGGAAAAAATTTAGCAGAATGGACAATCAATTCACTTGATTTTAAAAATGAAAGACCTGATCTTTT
TGTTACTGTTCCGCTTCATCCTAAAAAATTAAGTGAGCGTGGATATAATCAGTTGCATCTTTTTACGCGTGTTCTTTCAG
ATTTTTATAATATTCCTTACGATAACGAATTACTCAGGAGAAATCATTATTCTAAAGCACAGGCACTCAAAAATAAGCGA
AACCGCCTGAATACAGAGCATACATTTTCGGTTACAAAAGATGTTTCTGAAAAACATATTCTGCTGATTGACGACGTTTT
TACCACAGGAAATACATTGGCAACCATTGCATGGGAAATTCTCAGAAAAGGGAATAATAAACTGAGTATTTTGGTAATGG
CAATGGATGAATAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.691

100

0.507