Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OIE42_RS35320 Genome accession   NZ_CP109038
Coordinates   7973133..7974170 (-) Length   345 a.a.
NCBI ID   WP_371648538.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7968133..7979170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS35300 (OIE42_35290) - 7968660..7968806 (+) 147 WP_406347304.1 RICIN domain-containing protein -
  OIE42_RS35305 (OIE42_35295) - 7968833..7969858 (-) 1026 Protein_6967 endo-1,4-beta-xylanase -
  OIE42_RS35310 (OIE42_35300) - 7969926..7971386 (-) 1461 WP_406347305.1 non-reducing end alpha-L-arabinofuranosidase family hydrolase -
  OIE42_RS35315 (OIE42_35305) - 7971591..7973012 (-) 1422 WP_406346687.1 endo-1,4-beta-xylanase -
  OIE42_RS35320 (OIE42_35310) cytR 7973133..7974170 (-) 1038 WP_371648538.1 LacI family DNA-binding transcriptional regulator Regulator
  OIE42_RS35325 (OIE42_35315) - 7974353..7975645 (+) 1293 WP_406346688.1 ABC transporter substrate-binding protein -
  OIE42_RS35330 (OIE42_35320) - 7975642..7976538 (+) 897 WP_406346689.1 carbohydrate ABC transporter permease -
  OIE42_RS35335 (OIE42_35325) - 7976538..7977356 (+) 819 WP_406346690.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37108.24 Da        Isoelectric Point: 6.7683

>NTDB_id=670033 OIE42_RS35320 WP_371648538.1 7973133..7974170(-) (cytR) [Streptomyces sp. NBC_00648]
MTRAATLAEIAREAGVSAPTVSKVLNGRADVAQATRERVEELLRRHGYRRRRGTQSSPLLELVFHELESVWAMEVIRGVE
NVARDEGLSIVLSESSGRLTPGQSWVDGVLARRPTGVLLVLSGLDRSQQEQLAGRDIPFVVIDPAGDPGQGVPAVGTTNW
DGGLAATRHLLDLGHRRIGLIGGPSRMMCSRARADGYRAALDMAGIAYDPELVRDGDFHHEAGRRVGLELLGLPDRPTAV
FAGNDLQALGLYEAARELGLRIPADLSVVGFDDLPLARWVGPPLTTVRQPLTEMAEVATRMVIDLARGTRPGTLRVDLAT
SLVERSSTAPPQTPSRTVDGASPRL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=670033 OIE42_RS35320 WP_371648538.1 7973133..7974170(-) (cytR) [Streptomyces sp. NBC_00648]
GTGACCAGAGCCGCGACGCTCGCCGAGATCGCACGGGAGGCGGGGGTCTCGGCCCCGACTGTTTCGAAAGTCCTCAACGG
CCGAGCCGACGTCGCCCAGGCCACCCGGGAGCGGGTCGAGGAGTTGCTGCGCCGGCACGGCTACCGGCGGCGGCGCGGCA
CCCAGAGCAGCCCGCTCCTTGAACTGGTCTTCCACGAGCTGGAGAGCGTCTGGGCGATGGAGGTGATCCGCGGCGTCGAG
AACGTGGCGCGCGACGAGGGGCTGAGCATCGTCCTTTCGGAGTCCTCCGGGCGGCTCACCCCCGGCCAGTCCTGGGTGGA
CGGAGTGCTCGCCCGTCGCCCCACCGGCGTCCTCCTGGTCCTGTCCGGCCTGGACCGCTCCCAGCAGGAACAACTGGCCG
GCCGCGACATCCCGTTCGTGGTGATAGACCCGGCCGGCGACCCCGGCCAGGGGGTGCCCGCCGTCGGCACCACCAACTGG
GACGGCGGTCTCGCCGCCACCCGGCACCTGCTCGACCTCGGCCACCGCCGGATCGGCCTGATCGGCGGGCCGAGCCGGAT
GATGTGCAGCCGGGCCCGGGCCGATGGCTACCGGGCGGCCCTCGACATGGCGGGCATCGCGTACGACCCGGAGCTGGTCC
GCGACGGCGACTTCCACCACGAGGCCGGCCGCCGGGTGGGGCTGGAACTGCTGGGCCTGCCCGACCGGCCGACCGCCGTG
TTCGCGGGCAACGACCTCCAGGCCCTCGGGCTCTACGAGGCCGCCCGTGAGCTGGGGTTGCGCATCCCCGCGGATCTCAG
CGTGGTCGGCTTCGACGACCTGCCGCTGGCCCGCTGGGTCGGCCCTCCGCTCACCACCGTCCGCCAGCCGCTGACCGAGA
TGGCCGAGGTCGCCACCCGCATGGTGATCGACCTCGCCCGAGGCACCCGGCCCGGCACCCTGCGGGTGGACCTGGCCACC
AGCCTGGTCGAGCGGAGCAGCACCGCCCCGCCACAGACTCCGTCCCGAACGGTTGACGGAGCATCACCCCGCCTCTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(167-328)

Bacterial regulatory proteins, lacI family (LacI)

(6-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.982

97.681

0.371