Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MTP40_RS07375 Genome accession   NZ_CP094471
Coordinates   1540143..1541954 (+) Length   603 a.a.
NCBI ID   WP_156065783.1    Uniprot ID   -
Organism   Faecalibacterium sp. IP-3-29     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535143..1546954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP40_RS07345 (MTP40_07345) nth 1535258..1535959 (+) 702 WP_207683887.1 endonuclease III -
  MTP40_RS07350 (MTP40_07350) - 1535956..1536288 (+) 333 WP_005934393.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MTP40_RS07355 (MTP40_07355) - 1536426..1536743 (+) 318 WP_117534147.1 helix-turn-helix transcriptional regulator -
  MTP40_RS07360 (MTP40_07360) - 1536740..1537246 (+) 507 WP_207683888.1 DUF2812 domain-containing protein -
  MTP40_RS07365 (MTP40_07365) - 1537399..1537899 (+) 501 WP_156065779.1 MarR family transcriptional regulator -
  MTP40_RS07370 (MTP40_07370) - 1537892..1540141 (+) 2250 WP_249259091.1 ABC transporter ATP-binding protein -
  MTP40_RS07375 (MTP40_07375) rcrQ 1540143..1541954 (+) 1812 WP_156065783.1 ABC transporter ATP-binding protein Regulator
  MTP40_RS07380 (MTP40_07380) - 1542082..1542843 (+) 762 WP_249259092.1 AzlC family ABC transporter permease -
  MTP40_RS07385 (MTP40_07385) - 1542840..1543151 (+) 312 WP_249259093.1 AzlD domain-containing protein -
  MTP40_RS07390 (MTP40_07390) - 1543297..1543788 (+) 492 WP_117476140.1 sigma-70 family RNA polymerase sigma factor -
  MTP40_RS07395 (MTP40_07395) - 1543785..1544576 (+) 792 WP_249259094.1 zf-HC2 domain-containing protein -
  MTP40_RS07400 (MTP40_07400) - 1544573..1545436 (+) 864 WP_249259095.1 sugar nucleotide-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66708.18 Da        Isoelectric Point: 6.1956

>NTDB_id=669746 MTP40_RS07375 WP_156065783.1 1540143..1541954(+) (rcrQ) [Faecalibacterium sp. IP-3-29]
MPRPGKQTTERAKDFKGTLRQLLSALSQYKLSLIVVMVFAILSTIFNIAGPKILAKATTALATGWIAKLRGIGGIDFAYI
GKILLILLAMYLCSAAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSVT
QLITSITTMIGVLIMMLSISPKMTLIALLILPVSLVLVMLVVRFSQKYFKAQQATLGVVNGQVEEVYSGHNVIKAFNREA
AVLEDFNAANDKLFESAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGSIFAANGIITIGDIQAFIQYVRNFTQPIQQLAQV
SNMLQSMAAAAERVFEFLNEPEEDQLADPARRADPACIDGQVTFDHVRFGYVPEKTIIHDFSCKVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDIRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILILDEATSSVDTRTEQRIQTAMDNLMRGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=669746 MTP40_RS07375 WP_156065783.1 1540143..1541954(+) (rcrQ) [Faecalibacterium sp. IP-3-29]
ATGCCGAGACCCGGAAAACAGACCACCGAGCGCGCCAAGGATTTCAAGGGCACTCTGCGGCAGCTCCTCAGCGCATTGAG
CCAGTATAAGCTCTCCCTCATCGTTGTGATGGTCTTTGCCATCCTTTCCACCATCTTCAATATCGCAGGCCCCAAAATTC
TGGCCAAGGCCACCACGGCCCTTGCCACCGGCTGGATCGCCAAGCTGCGGGGGATCGGCGGCATCGACTTTGCCTACATC
GGCAAGATCCTGCTCATCCTGCTGGCCATGTACCTCTGCTCCGCCGCATTCAGCTTCATTCAGGGCTGGCTGATGACCGG
CCTTTCCCAGAAGGTCTGCTATGATTTCCGCCGCCAGATCAGCGAAAAGATCAACCGCCTGCCGCTGGCCTACTTTGAAA
AGCGGACAGTCGGCGAGGTGCTCTCCCGCATCACCAACGATGTGGACACCCTGGGCCAGAGCCTGAACCAGAGCGTGACC
CAGCTCATCACCAGCATTACCACCATGATCGGCGTGCTGATCATGATGCTGTCCATCAGCCCCAAAATGACCCTGATCGC
ACTGCTCATCCTGCCCGTCTCTCTGGTGCTGGTGATGCTGGTGGTCAGGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCACCCTGGGCGTTGTGAACGGTCAGGTGGAGGAGGTCTACTCCGGCCACAATGTCATCAAGGCCTTCAACCGGGAGGCC
GCCGTGCTGGAGGACTTCAACGCCGCCAACGACAAGCTGTTTGAATCCGCCTGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GCAGCCCATTATGAACTTTGTGGGCAACCTGGGCTATGTAGCCGTTGCCATCGTCGGCAGCATCTTTGCCGCCAACGGCA
TCATTACCATCGGCGATATCCAGGCTTTTATCCAGTATGTCCGCAATTTCACCCAGCCCATCCAGCAGCTGGCACAGGTG
TCCAACATGCTGCAGAGCATGGCCGCCGCTGCCGAGCGCGTGTTCGAGTTCCTGAACGAGCCCGAAGAGGATCAGCTGGC
CGACCCTGCCCGCCGGGCAGACCCTGCCTGCATTGATGGTCAGGTCACCTTTGACCATGTCCGGTTCGGTTATGTGCCCG
AAAAGACCATCATCCACGATTTCAGCTGTAAGGTGCAGCCCGGCCAGAAGGTCGCCATCGTTGGCCCCACCGGTGCCGGC
AAGACCACCATGGTCAAGCTGCTCATGCGGTTCTACGATGTAGATTCCGGCTCCATCACCCTGAATGGCCACGACATCCG
CGACTTTGACCGCAGTGCCCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACCTGGCTGTTCAAGGGCACCATCATGG
AGAATATCCGCTATGGCCGTCTGGATGCCACCGACGAAGAGGTCATTGCCGCCGCCAAGGCCGCCAATGCCGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCTTCCAACGTCAGTCAGGGCCAGAAGCAGCTGCT
GACGATCGCCCGGGCCATTCTGGCCGACAACCGCATCCTGATCCTGGACGAGGCCACCAGCAGTGTGGACACCCGAACCG
AACAGCGCATCCAGACTGCTATGGACAACCTGATGCGGGGCCGTACCAGTTTCGTCATCGCCCACCGCCTGTCCACCATC
CGGGATGCAGACCTCATCCTTGTCATGCGGGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTCATTGAGGCCGG
CGGTTTCTACGCTGACCTGTACAACAGCCAGTTTGAGGATGTTGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(33-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.618

97.347

0.502