Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MTP39_RS09035 Genome accession   NZ_CP094469
Coordinates   1920106..1921917 (+) Length   603 a.a.
NCBI ID   WP_249240277.1    Uniprot ID   -
Organism   Faecalibacterium sp. I3-3-33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915106..1926917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP39_RS09015 (MTP39_09015) - 1915390..1916046 (-) 657 WP_249240273.1 sortase -
  MTP39_RS09020 (MTP39_09020) - 1916111..1917109 (-) 999 WP_249240274.1 Na/Pi symporter -
  MTP39_RS09025 (MTP39_09025) - 1917314..1917823 (+) 510 WP_249240275.1 MarR family transcriptional regulator -
  MTP39_RS09030 (MTP39_09030) - 1917807..1920104 (+) 2298 WP_249240276.1 ABC transporter ATP-binding protein -
  MTP39_RS09035 (MTP39_09035) rcrQ 1920106..1921917 (+) 1812 WP_249240277.1 ABC transporter ATP-binding protein Regulator
  MTP39_RS09040 (MTP39_09040) - 1922124..1923041 (-) 918 WP_249240278.1 LysR family transcriptional regulator -
  MTP39_RS09045 (MTP39_09045) - 1923203..1925230 (+) 2028 WP_249240279.1 FAD-binding protein -
  MTP39_RS09050 (MTP39_09050) - 1925432..1926352 (+) 921 WP_249240280.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66768.01 Da        Isoelectric Point: 6.1332

>NTDB_id=669725 MTP39_RS09035 WP_249240277.1 1920106..1921917(+) (rcrQ) [Faecalibacterium sp. I3-3-33]
MPRPGRPTTERAKDFKGTLRQLIRTMSHYKLPLAAAMLFAVLSTIFNIAGPKVLAKATTALATGWIARLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPRMTLIALLILPVSLALVLVVVKFSQKYFKAQQATLGVVNGQVEEVYAGHNVVKAFNREA
VVLADFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGVITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEEQLADPARRADPSDIDGQVTFDHVRFGYTPDKTVIHDFSCTVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDAGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEVGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=669725 MTP39_RS09035 WP_249240277.1 1920106..1921917(+) (rcrQ) [Faecalibacterium sp. I3-3-33]
ATGCCCAGACCCGGACGTCCCACCACCGAGCGCGCCAAGGACTTTAAAGGCACGCTGCGGCAGCTCATCCGCACCATGAG
CCACTACAAACTGCCCCTTGCGGCAGCCATGCTGTTTGCTGTTCTGTCCACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAGGCCACCACCGCCCTTGCCACCGGCTGGATCGCCCGGCTGCGCGGCACCGGCAGCATTGATTTTGTGTATATC
GGCCGCATTCTGCTGTTTTTGCTGGGGATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTGATGACCGG
CCTTTCCCAGAAGGTCTGCTACGACTTCCGCCGCCAGATCAGCGAAAAGATCAACCGCCTGCCGCTGGCGTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTCTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGTATCACC
CAGCTGATCACCAGCGTGACCACCATGATCGGTGTGCTGGTGATGATGCTTTCCATCAGTCCCCGCATGACCCTGATCGC
CCTGCTGATCCTGCCGGTGTCGCTGGCGCTGGTGCTGGTGGTGGTCAAGTTCAGCCAGAAGTACTTCAAGGCGCAGCAGG
CCACGCTGGGCGTGGTCAACGGTCAGGTAGAAGAGGTTTACGCCGGTCACAACGTAGTCAAGGCGTTCAACCGGGAGGCC
GTGGTGCTGGCAGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTTCTCTCCGGCCTGAT
GATGCCCATCATGAACTTTGTGGGCAACCTGGGCTATGTGGCGGTGGCCATTGTTGGCAGCATTTTTGCCGCAAACGGCG
TTATCACCATTGGTGATATTCAGGCCTTTATCCAGTACGTCAAAAACTTCACCCAGCCCATCCAGCAGCTTTCGCAGGTG
TCCAATATGCTGCAAAGCATGGCCGCTGCTGCCGAGCGGGTGTTCGAGTTTTTGAATGAGCCGGAGGAAGAGCAGCTGGC
AGACCCCGCCCGCCGCGCCGACCCCTCCGATATTGACGGACAGGTCACCTTTGACCATGTGCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCACGACTTCAGCTGCACGGTGCAGCCCGGCCAAAAGGTAGCCATCGTAGGCCCCACCGGCGCGGGC
AAGACCACCATGGTCAAGCTGCTGATGCGCTTTTACGATGTGGACGCCGGTTCCATCACCCTGAACGGCCACGATGTGCG
GGACTTTGACCGCAGCGCCCTGCGCGAGGGCTTTGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTACGGCCGACTGGACGCCACCGATGAAGAGGTGATCGCCGCCGCAAAGGCCGCCAACGCCGATCACTTT
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTCAGTCAGGGACAGAAGCAGCTGCT
CACCATCGCCCGTACCATTCTGGCAGATAACCGCATTCTGATTTTGGACGAGGCCACCAGCAGCGTGGATACCCGCACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTCATCGCCCACCGCCTTTCCACCATC
CGCGATGCCGACCTCATCCTTGTCATGCGAGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAGGTCGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.767

97.347

0.494