Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG970_RS17355 Genome accession   NZ_CP109032
Coordinates   3875225..3877453 (-) Length   742 a.a.
NCBI ID   WP_406352383.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00658     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3870225..3882453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG970_RS17340 (OG970_17360) - 3870525..3870764 (+) 240 WP_266461894.1 heavy-metal-associated domain-containing protein -
  OG970_RS17345 (OG970_17365) - 3870866..3873130 (+) 2265 WP_406352382.1 heavy metal translocating P-type ATPase -
  OG970_RS17350 (OG970_17370) - 3873673..3874962 (-) 1290 WP_266461889.1 citrate synthase -
  OG970_RS17355 (OG970_17375) recD/recD2/recDB 3875225..3877453 (-) 2229 WP_406352383.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG970_RS17360 (OG970_17380) - 3877623..3878639 (+) 1017 WP_405908474.1 LacI family DNA-binding transcriptional regulator -
  OG970_RS17365 (OG970_17385) - 3878702..3880225 (+) 1524 WP_406352385.1 sugar ABC transporter ATP-binding protein -
  OG970_RS17370 (OG970_17390) - 3880215..3882161 (+) 1947 WP_371549019.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80347.98 Da        Isoelectric Point: 6.7889

>NTDB_id=669710 OG970_RS17355 WP_406352383.1 3875225..3877453(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00658]
MSQLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQFGKQFTVENYTTLLPA
TVQGIRRYLGSGLVKGIGPIFADRITQHFGLDTLQIIEEAPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEV
STSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVREKVPGPDGGEPVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPG
FHDVAWDKALAWLKGRTGTELAPEQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLA
ELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGGPVPAVRLTQVFRQAQKSGVVTNAHRINSGQHPHTENMNDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDAEEQR
LTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLSGAHL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=669710 OG970_RS17355 WP_406352383.1 3875225..3877453(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00658]
ATGTCTCAGCTGGCTGTCCTGGAGGGCGTACTCGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
GGTCGACACAGGGCGCGGCGGCGGCGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGCGCGCAGGTGGGGGAGTCCCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACGGTGGAGAACTACACGACGCTGCTGCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCGGGCCTGGTCAAGGGCATCGGACCGATCTTCGCCGACCGCATCACCCA
GCACTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGCCCCGAAGCGGCTCATCGAGGTGCCGGGGCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGACCGTCGAGGTG
TCCACGTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGTGGTCAAGAACCAGCCCTACCGGCT
CGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGCGTCAAGGCCGGCCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGCCTG
ATCGCGGACGCCGTGAAGCTCCTCCAGGTGGACACGGGCCTTGTCATCGAGTGCCTCGCGGAGCTGGCGGCACCGGCCGA
GGAAGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGGACGGCGGCGAGCCGGTGACGGCCATCTACCTGG
TCCCCTTCCATCGCGCCGAACTCTCCCTGTCCGCCCAGCTGTTGCGCCTCCTGCGCACCGACCAGGACCGGATGCCCGGC
TTCCATGACGTGGCCTGGGACAAGGCCCTTGCCTGGCTGAAGGGGCGTACGGGCACGGAGTTGGCGCCCGAGCAGGAGGA
GGCGGTCCGGCTCGCGCTCACCAAAAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGCT
CGATCGTGGAACTGGCGCGCGCCAAGCGGGCGAAGGTCGTCCTGGCGGCGCCGACGGGACGCGCAGCCAAGCGGCTCGCC
GAGCTGACCGGGGCCGAGGCCTCCACCGTGCACCGGCTCCTGGAGCTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGA
CCGGCCGCTGGACGCCGACCTGGTGGTCGTGGACGAGGCCTCGATGCTCGACCTGCTCCTCGCCAACAAGCTGGTCAAGG
CGGTGCCCCCGGGCGCGCATCTGCTCTTCGTCGGAGATGTCGACCAGCTCCCCAGCGTCGGCGCCGGCGAGGTGCTGCGC
GATCTGCTCGCCGACGGCGGCCCGGTCCCGGCGGTCCGCCTCACCCAGGTCTTCCGCCAGGCCCAGAAGTCCGGGGTGGT
GACGAACGCACACCGGATCAACTCGGGGCAGCACCCGCACACGGAGAACATGAACGACTTCTTCCTCTTCGTCGAGGACG
ACACCGAGGAGGCGGGACGGCTCACGGTGGATGTGGCGGCGCGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGC
GATGTCCAGGTCCTCGCGCCGATGCACCGGGGCCCGGCGGGCGCGGGCGCCCTCAACGGCCTCCTCCAGCAGGCCATCAC
ACCCGCCCGCCCGGACCTCCCCGAAAAGCGCTTCGGAGGCCGCGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCA
ACAACTACGAGAAGGGCAAGAACGGTGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTGGACGCGGAGGAGCAGCGC
CTGACCGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCCGT
GACGATCCACCGTTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCGTGGATGATGCTCCAGC
GCAACCTCCTCTACACGGCCGTCACCCGCGCGAAGAAGCTGGTCGTCCTCGTCGGCTCCCGCAAGGCGATAGGCCAGGCG
GTCCGCACGGTCTCCGCCGGACGGCGGTGCACGGCCCTGGACTTCCGCCTGTCCGGGGCACACCTCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(340-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.658

100

0.365