Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MTP36_RS06310 Genome accession   NZ_CP094467
Coordinates   1256480..1258291 (-) Length   603 a.a.
NCBI ID   WP_249254170.1    Uniprot ID   -
Organism   Faecalibacterium sp. I4-1-79     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251480..1263291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP36_RS06295 (MTP36_06295) - 1252023..1252943 (-) 921 WP_249254168.1 MoxR family ATPase -
  MTP36_RS06300 (MTP36_06300) - 1253147..1255174 (-) 2028 WP_055184947.1 FAD-binding protein -
  MTP36_RS06305 (MTP36_06305) - 1255347..1256264 (+) 918 WP_249254169.1 LysR family transcriptional regulator -
  MTP36_RS06310 (MTP36_06310) rcrQ 1256480..1258291 (-) 1812 WP_249254170.1 ABC transporter ATP-binding protein Regulator
  MTP36_RS06315 (MTP36_06315) - 1258293..1260590 (-) 2298 WP_249254171.1 ABC transporter ATP-binding protein -
  MTP36_RS06320 (MTP36_06320) - 1260574..1261083 (-) 510 WP_249254172.1 MarR family transcriptional regulator -
  MTP36_RS06325 (MTP36_06325) - 1261287..1262285 (+) 999 WP_249254173.1 Na/Pi symporter -
  MTP36_RS06330 (MTP36_06330) - 1262348..1263004 (+) 657 WP_249254174.1 sortase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66836.04 Da        Isoelectric Point: 6.0781

>NTDB_id=669698 MTP36_RS06310 WP_249254170.1 1256480..1258291(-) (rcrQ) [Faecalibacterium sp. I4-1-79]
MPRPGRPTTERAKDFKSTLRQLIRTMSHYKLPLAAAMLFAILSTIFNIAGPKVLAKATTALATGWIARLRGTGSIDFVYI
ARILLFLLGMYLLSSAFSFIQGWLMTDLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPHMTLIALLILPVSLALVLVVVKFSQKYFKAQQATLGVVNGQVEEVYAGHNVVKAFNREA
VVLADFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGVITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMSAAAERVFEFLNEPEEEQLANPARRADPADIDGQVTFDHVRFGYTPDKTVIHDFSCTVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDAGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=669698 MTP36_RS06310 WP_249254170.1 1256480..1258291(-) (rcrQ) [Faecalibacterium sp. I4-1-79]
ATGCCCAGACCCGGACGTCCCACCACCGAGCGTGCCAAGGACTTTAAAAGCACGCTGCGGCAGCTCATCCGCACCATGAG
CCACTACAAGTTGCCCCTTGCGGCAGCCATGCTGTTTGCAATTCTTTCTACCATCTTCAACATTGCAGGCCCCAAGGTGC
TGGCAAAAGCCACCACTGCCCTTGCCACCGGCTGGATCGCCCGGCTGCGCGGCACCGGCAGCATTGATTTTGTGTATATC
GCCCGCATTCTGCTGTTTTTGCTGGGGATGTACCTGCTGAGCAGCGCTTTCAGCTTTATTCAGGGCTGGCTGATGACCGA
CCTTTCCCAGAAGGTCTGCTACGACTTCCGCCGCCAGATCAGTGAAAAGATCAACCGCCTGCCGCTGGCGTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTTTCCCGCATCACCAACGACGTGGACACGCTGGGGCAGAGCCTGAACCAGAGCATCACC
CAGTTGATCACCAGCGTAACCACTATGATCGGTGTGCTGGTGATGATGCTCTCCATCAGCCCCCACATGACTCTGATCGC
TCTGCTGATTTTACCGGTATCGCTGGCGCTGGTGCTGGTGGTGGTCAAGTTCAGCCAGAAGTACTTTAAGGCACAGCAGG
CCACGCTGGGCGTGGTCAACGGTCAGGTAGAAGAGGTTTACGCCGGTCACAACGTGGTCAAGGCCTTCAATCGGGAGGCC
GTGGTGCTGGCTGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATCATGAACTTTGTGGGCAACCTGGGCTATGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCCGCAAACGGGG
TCATCACCATTGGTGATATTCAGGCCTTTATCCAGTACGTCAAAAACTTTACCCAGCCCATCCAGCAACTCTCGCAGGTG
TCCAATATGCTGCAAAGCATGTCCGCTGCCGCCGAGCGGGTATTCGAGTTTTTGAACGAGCCGGAGGAAGAGCAACTGGC
CAACCCTGCCCGCCGCGCCGACCCCGCCGACATTGACGGACAGGTCACCTTTGACCATGTGCGCTTCGGCTACACCCCGG
ACAAGACTGTTATCCACGACTTCAGCTGCACGGTGCAGCCCGGCCAGAAGGTAGCCATCGTAGGCCCCACCGGCGCGGGC
AAGACCACCATGGTCAAGCTGCTGATGCGCTTTTACGATGTGGATGCCGGTTCCATCACCCTGAACGGCCACGATGTGCG
GGACTTTGACCGCAGCGCTCTGCGCGAGGGCTTTGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGTTACGGTCGGCTTGACGCCACCGATGAAGAGGTGATCGCCGCCGCAAAGGCCGCCAACGCCGACCACTTT
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTCAGTCAGGGACAGAAGCAGCTGCT
TACCATTGCCCGCACTATTCTGGCAGATAACCGCATCCTGATTTTGGACGAGGCTACCAGCAGCGTGGATACCCGCACCG
AGCAGCGCATCCAGACCGCCATGGATCGCCTGATGGAGGGCCGCACCAGCTTTGTCATCGCTCACCGCCTTTCCACCATC
CGGGACGCCGACCTTATCCTTGTCATGCGGGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAGGCCGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGATGTTGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.937

97.347

0.496