Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | MQW34_RS19130 | Genome accession | NZ_CP094455 |
| Coordinates | 3735584..3736363 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. ZJS3 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3705767..3755172 | 3735584..3736363 | within | 0 |
Gene organization within MGE regions
Location: 3705767..3755172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQW34_RS18995 (MQW34_19025) | asd | 3706186..3707232 (-) | 1047 | WP_000414848.1 | aspartate-semialdehyde dehydrogenase | - |
| MQW34_RS19000 (MQW34_19030) | dpaB | 3707383..3707982 (-) | 600 | WP_001049480.1 | dipicolinate synthase subunit B | - |
| MQW34_RS19005 (MQW34_19035) | dpaA | 3707979..3708881 (-) | 903 | WP_078419078.1 | dipicolinic acid synthetase subunit A | - |
| MQW34_RS19010 (MQW34_19040) | - | 3709156..3709407 (-) | 252 | WP_210625272.1 | YlmC/YmxH family sporulation protein | - |
| MQW34_RS19015 (MQW34_19045) | - | 3709534..3710775 (-) | 1242 | WP_000592994.1 | M16 family metallopeptidase | - |
| MQW34_RS19020 (MQW34_19050) | - | 3710862..3711761 (-) | 900 | WP_210625273.1 | polysaccharide deacetylase family protein | - |
| MQW34_RS19025 (MQW34_19055) | pnp | 3711913..3714051 (-) | 2139 | WP_061531012.1 | polyribonucleotide nucleotidyltransferase | - |
| MQW34_RS19030 (MQW34_19060) | rpsO | 3714212..3714481 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| MQW34_RS19035 (MQW34_19065) | ribF | 3714582..3715553 (-) | 972 | WP_243498200.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| MQW34_RS19040 (MQW34_19070) | truB | 3715597..3716520 (-) | 924 | WP_000399337.1 | tRNA pseudouridine(55) synthase TruB | - |
| MQW34_RS19045 (MQW34_19075) | rbfA | 3716607..3716963 (-) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| MQW34_RS19050 (MQW34_19080) | - | 3716979..3717260 (-) | 282 | WP_078419073.1 | DUF503 domain-containing protein | - |
| MQW34_RS19055 (MQW34_19085) | infB | 3717257..3719317 (-) | 2061 | WP_000036341.1 | translation initiation factor IF-2 | - |
| MQW34_RS19060 (MQW34_19090) | - | 3719322..3719633 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| MQW34_RS19065 (MQW34_19095) | rnpM | 3719634..3719906 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| MQW34_RS19070 (MQW34_19100) | nusA | 3719918..3721024 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| MQW34_RS19075 (MQW34_19105) | rimP | 3721042..3721512 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| MQW34_RS19080 (MQW34_19110) | - | 3721845..3726146 (-) | 4302 | WP_243498202.1 | PolC-type DNA polymerase III | - |
| MQW34_RS19085 (MQW34_19115) | - | 3726271..3727971 (-) | 1701 | WP_210625277.1 | proline--tRNA ligase | - |
| MQW34_RS19090 (MQW34_19120) | rseP | 3728081..3729337 (-) | 1257 | WP_001090246.1 | RIP metalloprotease RseP | - |
| MQW34_RS19095 (MQW34_19125) | dxr | 3729354..3730496 (-) | 1143 | WP_098667735.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| MQW34_RS19100 (MQW34_19130) | cdsA | 3730520..3731311 (-) | 792 | WP_000813596.1 | phosphatidate cytidylyltransferase | - |
| MQW34_RS19105 (MQW34_19135) | uppS | 3731329..3732105 (-) | 777 | WP_078419066.1 | isoprenyl transferase | - |
| MQW34_RS19110 (MQW34_19140) | frr | 3732191..3732748 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| MQW34_RS19115 (MQW34_19145) | pyrH | 3732751..3733473 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| MQW34_RS19120 (MQW34_19150) | tsf | 3733540..3734427 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| MQW34_RS19125 (MQW34_19155) | rpsB | 3734531..3735232 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| MQW34_RS19130 (MQW34_19160) | codY | 3735584..3736363 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| MQW34_RS19135 (MQW34_19165) | hslU | 3736441..3737832 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| MQW34_RS19140 (MQW34_19170) | hslV | 3737855..3738397 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| MQW34_RS19145 (MQW34_19175) | xerC | 3738440..3739339 (-) | 900 | WP_243498204.1 | tyrosine recombinase XerC | - |
| MQW34_RS19150 (MQW34_19180) | trmFO | 3739405..3740709 (-) | 1305 | WP_062923086.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| MQW34_RS19155 (MQW34_19185) | topA | 3740760..3742838 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| MQW34_RS19160 (MQW34_19190) | dprA | 3742983..3743852 (-) | 870 | WP_078419064.1 | DNA-processing protein DprA | - |
| MQW34_RS19165 (MQW34_19195) | sucD | 3743940..3744842 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| MQW34_RS19170 (MQW34_19200) | sucC | 3744863..3746023 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| MQW34_RS19175 (MQW34_19205) | rnhB | 3746217..3746990 (-) | 774 | WP_243498207.1 | ribonuclease HII | - |
| MQW34_RS19180 (MQW34_19210) | ylqF | 3747042..3747932 (-) | 891 | WP_078419062.1 | ribosome biogenesis GTPase YlqF | - |
| MQW34_RS19185 (MQW34_19215) | lepB | 3747953..3748504 (-) | 552 | WP_078419061.1 | signal peptidase I | - |
| MQW34_RS19190 (MQW34_19220) | rplS | 3748606..3748950 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| MQW34_RS19195 (MQW34_19225) | trmD | 3749097..3749831 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| MQW34_RS19200 (MQW34_19230) | rimM | 3749831..3750346 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| MQW34_RS19205 (MQW34_19235) | - | 3750467..3750694 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| MQW34_RS19210 (MQW34_19240) | rpsP | 3750709..3750981 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| MQW34_RS19215 (MQW34_19245) | ffh | 3751082..3752431 (-) | 1350 | WP_243498209.1 | signal recognition particle protein | - |
| MQW34_RS19220 (MQW34_19250) | - | 3752444..3752776 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| MQW34_RS19225 (MQW34_19255) | ftsY | 3752911..3753900 (-) | 990 | WP_000007649.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=669645 MQW34_RS19130 WP_000421288.1 3735584..3736363(-) (codY) [Bacillus sp. ZJS3]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=669645 MQW34_RS19130 WP_000421288.1 3735584..3736363(-) (codY) [Bacillus sp. ZJS3]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTTTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAGATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCACTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATCGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTTTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAGATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCACTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATCGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |